Browse Element(s) Details


Os.10235.1.S1_at

Description gb:AK119625.1
DB_XREF= gi:37989248
TID=Os.10235.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.10235 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20587 AOBP-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-H10, full insert sequence.
FL= gb:AK065816.1 gb:AK104095.1 gb:AY224430.1 gb:AK119625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4857011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48560Os.51714.1.S1_at11/117+29071350..29073961Homeobox domain containing protein, expressed
LOC_Os07g48570Os.10235.1.S1_at11/117+29075516..29079483Dof domain, zinc finger family protein, expressed
LOC_Os07g48570Os.16906.1.S1_at1/117+29075516..29079483Dof domain, zinc finger family protein, expressed
LOC_Os07g48580NANA7+29083200..29084333retrotransposon protein, putative, LINE subclass
LOC_Os07g48590OsAffx.21308.1.S1_at2/117+29088212..29088983hypothetical protein
LOC_Os07g48590Os.41653.1.S1_x_at2/117+29088212..29088983hypothetical protein
LOC_Os07g48596Os.52524.1.S1_at10/117+29090310..29092447transfactor, putative, expressed
LOC_Os07g48602Os.10916.1.S1_at11/117+29094835..29098167expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10235.1.S1_at--383--7031Chr07:29076141..29076165 (25 bp)
GTACATGTTCAGACAACGGCTCTCC
LOC_Os07g48570
Os.10235.1.S1_at--605--951Chr07:29076110..29076134 (25 bp)
AGGAAAGCACTCCAGGGACTCCAAA
LOC_Os07g48570
Os.10235.1.S1_at--707--6291Chr07:29076028..29076052 (25 bp)
GATGATCCTGACGAAGCTGCAAAGA
LOC_Os07g48570
Os.10235.1.S1_at--633--2771Chr07:29076007..29076031 (25 bp)
AAGAGCTCAATCTGGACAACCCTTG
LOC_Os07g48570
Os.10235.1.S1_at--581--5611Chr07:29075993..29076017 (25 bp)
GACAACCCTTGGCATTGAACCTGGT
LOC_Os07g48570
Os.10235.1.S1_at--347--1771Chr07:29075975..29075999 (25 bp)
ACCTGGTGACCGTAGCATGTTCAGA
LOC_Os07g48570
Os.10235.1.S1_at--889--4991Chr07:29075961..29075985 (25 bp)
GCATGTTCAGATCATTCCAGTCGAA
LOC_Os07g48570
Os.10235.1.S1_at--343--10151Chr07:29075874..29075898 (25 bp)
TATCTCGATCTCAATCTTTCCAGGA
LOC_Os07g48570
Os.10235.1.S1_at--995--4611Chr07:29075756..29075780 (25 bp)
GCGATGTAGGCGCTGCTGCAAACAT
LOC_Os07g48570
Os.10235.1.S1_at--1070--8651Chr07:29075663..29075687 (25 bp)
TGTGGAGCATGCACCAGTCTACTGG
LOC_Os07g48570
Os.10235.1.S1_at--1026--7671Chr07:29075640..29075664 (25 bp)
GGGTTCATGATCAGGCTGTCAGCAT
LOC_Os07g48570
Target Sequence 
GTACATGTTCAGACAACGGCTCTCCTGTCCTAGGAAAGCACTCCAGGGACTCCAAACCGCAAGGAGATGACAAGGCAGAG
AAAAACTTGTGGATTCCGAAAACGCTTCGGATCGATGATCCTGACGAAGCTGCAAAGAGCTCAATCTGGACAACCCTTGG
CATTGAACCTGGTGACCGTAGCATGTTCAGATCATTCCAGTCGAAACCTGAAAGCAGGGAGCAGATATCCGGTGCTGCAC
GAGTCCTGCAGGCGAATCCAGCAGCTCTATCTCGATCTCAATCTTTCCAGGAGACAACGTGATGTATATTGAAGAAATCG
TGTGACAATTGTAGAACATGTTACTACTATAATTTAAGCAAGTGCTACAGCCTGAAGGATGATTGGCGATGTAGGCGCTG
CTGCAAACATGGAGGCAGCGTGATCTGTACTATTGAAACCTGAAGAGTACTATTCTTGACATTTTTCTATAATTTGCCTG
TGGAGCATGCACCAGTCTACTGGGTTCATGATCAGGCTGTCAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis