Browse Element(s) Details


Os.51714.1.S1_at

Description gb:AK073232.1
DB_XREF= gi:32983255
TID=Os.51714.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51714 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033021B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033021B15, full insert sequence.
FL= gb:AK073232.1 gb:AK063503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4856011/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48560Os.51714.1.S1_at11/117+29071350..29073961Homeobox domain containing protein, expressed
LOC_Os07g48570Os.10235.1.S1_at11/117+29075516..29079483Dof domain, zinc finger family protein, expressed
LOC_Os07g48570Os.16906.1.S1_at1/117+29075516..29079483Dof domain, zinc finger family protein, expressed
LOC_Os07g48580NANA7+29083200..29084333retrotransposon protein, putative, LINE subclass
LOC_Os07g48590OsAffx.21308.1.S1_at2/117+29088212..29088983hypothetical protein
LOC_Os07g48590Os.41653.1.S1_x_at2/117+29088212..29088983hypothetical protein
LOC_Os07g48596Os.52524.1.S1_at10/117+29090310..29092447transfactor, putative, expressed
LOC_Os07g48602Os.10916.1.S1_at11/117+29094835..29098167expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008284biological_processpositive regulation of cell proliferation
GO:0010075biological_processregulation of meristem size
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51714.1.S1_at--532--5991Chr07:29073254..29073469 (25 bp)
GAGAGCTACTTCCTGGTCACGAGGT
LOC_Os07g48560
Os.51714.1.S1_at--840--7091Chr07:29073460..29073484 (25 bp)
GTCACGAGGTCGTCTTGATCGAGTT
LOC_Os07g48560
Os.51714.1.S1_at--300--7411Chr07:29073527..29073551 (25 bp)
GTGTCAGCAAGATTTAGGTACCCCT
LOC_Os07g48560
Os.51714.1.S1_at--294--3931Chr07:29073601..29073625 (25 bp)
CGGCCGGTTAATTACGCGATCGATC
LOC_Os07g48560
Os.51714.1.S1_at--313--5271Chr07:29073641..29073665 (25 bp)
GAATGCTGCACGTACGCATGGCAAT
LOC_Os07g48560
Os.51714.1.S1_at--440--3171Chr07:29073663..29073687 (25 bp)
AATTGTCACTGCGACGAGCCTGCAT
LOC_Os07g48560
Os.51714.1.S1_at--1011--6391Chr07:29073706..29073730 (25 bp)
GATCGTCATTCTAGCGACCAAGCAG
LOC_Os07g48560
Os.51714.1.S1_at--324--651Chr07:29073799..29073823 (25 bp)
ATGCATGTGTACTTCTGTGGCCATA
LOC_Os07g48560
Os.51714.1.S1_at--363--231Chr07:29073858..29073882 (25 bp)
ATATTCGTTTTTCATCTAGCTGGTC
LOC_Os07g48560
Os.51714.1.S1_at--401--7431Chr07:29073892..29073916 (25 bp)
GTGTACTTGTATGTATCCCGTTCTC
LOC_Os07g48560
Os.51714.1.S1_at--524--551Chr07:29073906..29073930 (25 bp)
ATCCCGTTCTCGATCTTTATATCAG
LOC_Os07g48560
Target Sequence 
GAGAGCTACTTCCTGGTCACGAGGTCGTCTTGATCGAGTTGAGCGATTCGTCGATTGATTGATCGATGGCAACGTACGTA
TTGTGTCAGCAAGATTTAGGTACCCCTTGTCCGTTGGATCAGATCGATATGCAAGCAACGCATGCTTTGCAGGTGCCGGC
CGGTTAATTACGCGATCGATCGAGCTAGCAGATGATGAATGCTGCACGTACGCATGGCAATTGTCACTGCGACGAGCCTG
CATATATATGAACGATCCATTGATCGTCATTCTAGCGACCAAGCAGCACGATAGTACAAGTATATACTATACAATGCAAT
TGCAGCGACGAACTAGTTAATTATAATACAGATAATGCATGTGTACTTCTGTGGCCATACATATATATATAGAGAGAGAG
GGGATTAATTACTATATTCGTTTTTCATCTAGCTGGTCGATCTCTGTGTGTACTTGTATGTATCCCGTTCTCGATCTTTA
TATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51714.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis