Browse Element(s) Details


Os.10916.1.S1_at

Description gb:AK107323.1
DB_XREF= gi:32992532
TID=Os.10916.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-E08, full insert sequence.
FL= gb:AK107323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4860211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48560Os.51714.1.S1_at11/117+29071350..29073961Homeobox domain containing protein, expressed
LOC_Os07g48570Os.10235.1.S1_at11/117+29075516..29079483Dof domain, zinc finger family protein, expressed
LOC_Os07g48570Os.16906.1.S1_at1/117+29075516..29079483Dof domain, zinc finger family protein, expressed
LOC_Os07g48580NANA7+29083200..29084333retrotransposon protein, putative, LINE subclass
LOC_Os07g48590OsAffx.21308.1.S1_at2/117+29088212..29088983hypothetical protein
LOC_Os07g48590Os.41653.1.S1_x_at2/117+29088212..29088983hypothetical protein
LOC_Os07g48596Os.52524.1.S1_at10/117+29090310..29092447transfactor, putative, expressed
LOC_Os07g48602Os.10916.1.S1_at11/117+29094835..29098167expressed protein
LOC_Os07g48610Os.53114.1.S1_at11/117+29108210..29110097hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g48620Os.50467.1.S1_at11/117+29110603..29113698expressed protein
LOC_Os07g48630Os.10423.1.S1_at11/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48630Os.10423.1.S1_s_at11/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48630Os.12691.3.S1_x_at1/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48640Os.36076.1.S1_at11/117+29120197..29123265oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10916.1.S1_at--864--2491Chr07:29096402..29096426 (25 bp)
AACAGGCGGTGGCTTTTCTGCAGCT
LOC_Os07g48602
Os.10916.1.S1_at--582--9271Chr07:29096372..29096396 (25 bp)
TCCTGCTGGCGGAGGATTTGCTGCT
LOC_Os07g48602
Os.10916.1.S1_at--967--9131Chr07:29096291..29096315 (25 bp)
TGCGGCTTCATCTGGTGGCGGCTTT
LOC_Os07g48602
Os.10916.1.S1_at--653--8491Chr07:29095307..29095331 (25 bp)
TGGCTCTGCTGGATCTGGAGGACCC
LOC_Os07g48602
Os.10916.1.S1_at--172--3091Chr07:29095254..29095278 (25 bp)
AATAACAGAGTTGTTTCCAGGTATC
LOC_Os07g48602
Os.10916.1.S1_at--1090--6891Chr07:29095234..29095258 (25 bp)
GTATCCTAGTTCTTCATTCCTTTCG
LOC_Os07g48602
Os.10916.1.S1_at--1063--7531Chr07:29095203..29095227 (25 bp)
GTGGCCCTTATGCATGCACCAAAAA
LOC_Os07g48602
Os.10916.1.S1_at--641--10231Chr07:29095153..29095177 (25 bp)
TATTGTGGAACTCCCAGCACCTGGT
LOC_Os07g48602
Os.10916.1.S1_at--1065--1491Chr07:29095138..29095162 (25 bp)
AGCACCTGGTAAGTTCAACCTCGAT
LOC_Os07g48602
Os.10916.1.S1_at--972--2811Chr07:29095128..29095152 (25 bp)
AAGTTCAACCTCGATATTTGTACAT
LOC_Os07g48602
Os.10916.1.S1_at--50--5931Chr07:29095029..29095053 (25 bp)
GAGCAGTGCGCATGCATGATCAGAA
LOC_Os07g48602
Target Sequence 
AACAGGCGGTGGCTTTTCTGCAGCTGCTGCTCCTGCTGGCGGAGGATTTGCTGCTGCTGNTACTGGTGGAGGGTTTGNTG
CTCTTGCCTCCAAAGGTGGGGGTTTTGCGNCTGCGGCTTCATCTGGTGGCGGCTTTGGAGGTGCAGCCCAGGGAAGTGGN
TTCAGCAGTGGTGGATTTGGANCNTTTTGGTGGTAATCNAAGGGTNTGNCTTCTCGGCATTTGCTGGGANGTGGCTCTGC
TGGATCTGGAGGACCCCCAGCGAATCTTTTGACACAGATGAGAAAATAACAGAGTTGTTTCCAGGTATCCTAGTTCTTCA
TTCCTTTCGGNTGCAGTGGCCCTTATGCATGCACCAAAAATTGTTNTTNGTGCATTAGCNGTAGNTATTGTGGAACTCCC
AGCACCTGGTAAGTTCAACCTCGATATTTGTACATNGAACACAGTGGNTAATATGGAACTGACTGANGAACATTTTTGGA
CCCCCTATTTCTTTCAACAANGAGATAGATGAGCAGTGCGCATGCATGATCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis