Browse Element(s) Details


Os.36076.1.S1_at

Description gb:AK064532.1
DB_XREF= gi:32974550
TID=Os.36076.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-H04, full insert sequence.
FL= gb:AK064532.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4864011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48602Os.10916.1.S1_at11/117+29094835..29098167expressed protein
LOC_Os07g48610Os.53114.1.S1_at11/117+29108210..29110097hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g48620Os.50467.1.S1_at11/117+29110603..29113698expressed protein
LOC_Os07g48630Os.10423.1.S1_at11/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48630Os.10423.1.S1_s_at11/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48630Os.12691.3.S1_x_at1/117+29114314..29116978ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os07g48640Os.36076.1.S1_at11/117+29120197..29123265oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g48650Os.49915.1.A1_at11/117+29128580..29131180Subtilisin N-terminal Region family protein, expressed
LOC_Os07g48660Os.57096.1.S1_at11/117+29143215..29145344bZIP transcription factor family protein, expressed
LOC_Os07g48670NANA7+29148147..29149634retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36076.1.S1_at--687--1471Chr07:29122583..29122607 (25 bp)
AGAATTGTTAACACCACCTCTCTTC
LOC_Os07g48640
Os.36076.1.S1_at--550--3371Chr07:29122597..29122621 (25 bp)
CACCTCTCTTCGGTCAGAGTTGAAG
LOC_Os07g48640
Os.36076.1.S1_at--235--5211Chr07:29122715..29122739 (25 bp)
GAATTCCCAATGAGAAGCTCCGCGA
LOC_Os07g48640
Os.36076.1.S1_at--1006--4771Chr07:29122743..29122767 (25 bp)
GCTGCGCAACATCGACATCTGGGAC
LOC_Os07g48640
Os.36076.1.S1_at--1065--4731Chr07:29122788..29122812 (25 bp)
GCTGAACGAGTTCTTGCTTGACCTG
LOC_Os07g48640
Os.36076.1.S1_at--535--8051Chr07:29122920..29122944 (25 bp)
GGAGATGCGCATCAACTGCGTTCAC
LOC_Os07g48640
Os.36076.1.S1_at--819--6751Chr07:29122939..29122963 (25 bp)
GTTCACCCTGGATTTGTCAACACGG
LOC_Os07g48640
Os.36076.1.S1_at--441--1071Chr07:29122980..29123004 (25 bp)
AGGGATCATCCCTCCTGAAGAAGGC
LOC_Os07g48640
Os.36076.1.S1_at--738--1691Chr07:29123046..29123070 (25 bp)
ACCAACCGGTTGCTACTTTGATCAA
LOC_Os07g48640
Os.36076.1.S1_at--735--9751Chr07:29123132..29123156 (25 bp)
TAATCATCCTTCCATGCTAGCTTAG
LOC_Os07g48640
Os.36076.1.S1_at--340--6571Chr07:29123190..29123214 (25 bp)
GATTCATGGATGTTTCACAGACTAA
LOC_Os07g48640
Target Sequence 
AGAATTGTTAACACCACCTCTCTTCGGTCAGAGTTGAAGAGAATTCCCAATGAGAAGCTCCGCGACGAGCTGCGCAACAT
CGACATCTGGGACGAAGCACGGATAGAAGCGATGCTGAACGAGTTCTTGCTTGACCTGAAGAACGAACGGNTTGAGGAGN
CAGGATGNCCANCAATGCTGCCGGCTTACAGCATGTCCAAGNCCGTCGTCAACCTNTACACCAGGATCCTGGCCAAGAGG
CACCNCGGAGATGCGCATCAACTGCGTTCACCCTGGATTTGTCAACACGGAGATCAACTGGAATACAGGGATCATCCCTC
CTGAAGAAGGCGCGAGAGGTNCGGTCAAGGCAGCTCTGCTCCCTCAGGATGGACCAACCGGTTGCTACTTTGATCAAACA
GAGTTGGGTGAAGCTTGGTAGTAAAANATAGCATTATAAAATTATTAAGCATGTTTAATAATCATCCTTCCATGCTAGCT
TAGCGATCAGAGCTGTGTAAACATATACCACTACATGATTCATGGATGTTTCACAGACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis