Browse Element(s) Details


Os.5187.1.S1_at

Description gb:AK062162.1
DB_XREF= gi:32972180
TID=Os.5187.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B03, full insert sequence.
FL= gb:AK062162.1 gb:AK066780.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4877011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48710Os.4651.1.S1_at11/117+29169385..29170532VQ motif family protein, expressed
LOC_Os07g48720Os.52517.1.S1_at11/117+29172299..29176633RINT-1/TIP-1 family protein, expressed
LOC_Os07g48730Os.49354.1.S1_at11/117+29177968..29179798serine/threonine-protein kinase NAK, putative, expressed
LOC_Os07g48750Os.9163.1.S1_at2/117+29182003..29186422Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os07g48760OsAffx.16766.1.S1_at11/117+29188672..29192485CIPK-like protein 1, putative, expressed
LOC_Os07g48770Os.5187.1.S1_at11/117+29193380..29195770expressed protein
LOC_Os07g48780Os.51736.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.182.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.57504.1.S1_x_at6/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48790Os.53516.1.S1_at11/117+29200303..292028635'-AMP-activated protein kinase, beta subunit, complex-interacting region containing protein, expressed
LOC_Os07g48800OsAffx.28959.1.S1_s_at11/117+29205241..29205849VQ motif family protein, expressed
LOC_Os07g48810Os.13937.1.S1_at11/117+29207863..29211082peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os07g48820Os.10220.1.S1_at11/117+29211788..29215712Transcription factor HBP-1b, putative, expressed
LOC_Os07g48830Os.2677.1.S1_at11/117+29218623..29220150galactinol synthase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5187.1.S1_at--856--971Chr07:29194068..29194092 (25 bp)
AGGATTGGCTCAAAGTGCCTTCCGA
LOC_Os07g48770
Os.5187.1.S1_at--633--2171Chr07:29193868..29194014 (25 bp)
ACACTGTCCCTAGGCTTGATGAGGC
LOC_Os07g48770
Os.5187.1.S1_at--386--8891Chr07:29193825..29193849 (25 bp)
TGAGTGGAGCTCAAGCATCCTGGAA
LOC_Os07g48770
Os.5187.1.S1_at--193--9051Chr07:29193789..29193813 (25 bp)
TGCAGATGATGTTGCCAAGGCTTCA
LOC_Os07g48770
Os.5187.1.S1_at--77--5431Chr07:29193756..29193780 (25 bp)
GAAGCCATCTGAGGGTAATACCGTG
LOC_Os07g48770
Os.5187.1.S1_at--571--10751Chr07:29193671..29193695 (25 bp)
TTGACACTGTCTGGAGGCTGGAGCT
LOC_Os07g48770
Os.5187.1.S1_at--197--6591Chr07:29193646..29193670 (25 bp)
GATTGCTGCTTCAAATTAAACCGGA
LOC_Os07g48770
Os.5187.1.S1_at--210--7251Chr07:29193618..29193642 (25 bp)
GTCCGTCATGAAACTCGATCTATCC
LOC_Os07g48770
Os.5187.1.S1_at--150--10211Chr07:29193526..29193550 (25 bp)
TATTTGCCTGGGTACTGCTTGTATT
LOC_Os07g48770
Os.5187.1.S1_at--134--5231Chr07:29193484..29193508 (25 bp)
GAATCGACTCATAACCGGACCAAAT
LOC_Os07g48770
Os.5187.1.S1_at--306--1071Chr07:29193453..29193477 (25 bp)
AGGGATTCATCACTGTAGCTCCAGC
LOC_Os07g48770
Target Sequence 
AGGATTGGCTCAAAGTGCCTTCCGAGGAGCTGGCCGCTGCCTTTGAGGACCCTGTCATCANAAGACATCCCCAGGGCCAC
ACTGTCCCTAGGCTTGATGAGGCAAGTGTGAAGCAGCTTTCTGAGTGGAGCTCAAGCATCCTGGAAGACATCAAGAATGC
AGATGATGTTGCCAAGGCTTCAANTGTGGAGAAGCCATCTGAGGGTAATACCGTGGCAGAGTCCGGTGAAAACCTGGTGG
AGCAAATTGCAGCTTGAGTATGGTAACTGACAGTCTTGACACTGTCTGGAGGCTGGAGCTGATTGCTGCTTCAAATTAAA
CCGGATTAGTCCGTCATGAAACTCGATCTATCCAAATGTTTAAGTCTTTAAGAGCTTTCTTTTTTAGCGAAGATGTTTAA
AAACTTTGTTACCACAAATATATTTGCCTGGGTACTGCTTGTATTCTCTGGGGGAACTAATTGAATCGACTCATAACCGG
ACCAAATGGATTCAGGGATTCATCACTGTAGCTCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis