Browse Element(s) Details


Os.10220.1.S1_at

Description gb:AB051295.1
DB_XREF= gi:17025919
GEN=OsNIF2
TID=Os.10220.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10220 (NCBI UniGene Cluster)
DEF=Oryza sativa OsNIF2 mRNA for bZIP transcription factor, complete cds.
PROD=bZIP transcription factor
FL= gb:AB051295.1 gb:AK100440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4882011/11Transcription factor HBP-1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48760OsAffx.16766.1.S1_at11/117+29188672..29192485CIPK-like protein 1, putative, expressed
LOC_Os07g48770Os.5187.1.S1_at11/117+29193380..29195770expressed protein
LOC_Os07g48780Os.51736.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.182.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.57504.1.S1_x_at6/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48790Os.53516.1.S1_at11/117+29200303..292028635'-AMP-activated protein kinase, beta subunit, complex-interacting region containing protein, expressed
LOC_Os07g48800OsAffx.28959.1.S1_s_at11/117+29205241..29205849VQ motif family protein, expressed
LOC_Os07g48810Os.13937.1.S1_at11/117+29207863..29211082peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os07g48820Os.10220.1.S1_at11/117+29211788..29215712Transcription factor HBP-1b, putative, expressed
LOC_Os07g48830Os.2677.1.S1_at11/117+29218623..29220150galactinol synthase 3, putative, expressed
LOC_Os07g48840Os.31656.2.S1_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48840Os.31656.1.S1_x_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48850Os.31656.3.S1_at11/117+29226061..29231067pentatricopeptide, putative, expressed
LOC_Os07g48860OsAffx.5665.2.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_x_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48870Os.32634.1.S1_at11/117+29240396..29241891Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10220.1.S1_at--918--8611Chr07:29215125..29215149 (25 bp)
TGGGTTTTTCCCTGTACAATTGTGT
LOC_Os07g48820
Os.10220.1.S1_at--226--791Chr07:29215272..29215296 (25 bp)
ATGTGTCCTGAGTTGTTTTGTTGTA
LOC_Os07g48820
Os.10220.1.S1_at--103--8751Chr07:29215338..29215362 (25 bp)
TGTAACTAAAGCTCTGCTGCTCACG
LOC_Os07g48820
Os.10220.1.S1_at--460--9111Chr07:29215352..29215376 (25 bp)
TGCTGCTCACGTTGCATAATGTTGT
LOC_Os07g48820
Os.10220.1.S1_at--1075--6771Chr07:29215386..29215410 (25 bp)
GTTAGCTAGTGATGCCCATTTTACC
LOC_Os07g48820
Os.10220.1.S1_at--502--171Chr07:29215403..29215427 (25 bp)
ATTTTACCTGCACTCCTCTGGGAAG
LOC_Os07g48820
Os.10220.1.S1_at--160--2551Chr07:29215432..29215456 (25 bp)
AACTGCAACCTGAAGCAACCACGGT
LOC_Os07g48820
Os.10220.1.S1_at--965--231Chr07:29215492..29215516 (25 bp)
ATATATATGGGCTCAACATCGCTGC
LOC_Os07g48820
Os.10220.1.S1_at--1027--2491Chr07:29215506..29215530 (25 bp)
AACATCGCTGCCAAATCCTGAGATA
LOC_Os07g48820
Os.10220.1.S1_at--809--9071Chr07:29215542..29215566 (25 bp)
TGCTAAACTGCTACTTCCACATGAA
LOC_Os07g48820
Os.10220.1.S1_at--781--9871Chr07:29215625..29215649 (25 bp)
TACATAATTCCTGTACGGGTCTGAA
LOC_Os07g48820
Target Sequence 
TGGGTTTTTCCCTGTACAATTGTGTTTGGCAGCTGTGGAGCTAAAGTTAAAAACTGTACCTAAAGTGGTGTATGCAAATA
GGTGAAGCCTCTAAGTAAGTTATAACGATTGCATTATTGTGTTAGCAATAAAAGTTGGGTAATTCAGGATGTGTCCTGAG
TTGTTTTGTTGTAGTAGAAGAACTGCATGTAGTGGCTGGAAATGCAGTGTTGAATGTAACTAAAGCTCTGCTGCTCACGT
TGCATAATGTTGTGTAGTAATAGTTAGCTAGTGATGCCCATTTTACCTGCACTCCTCTGGGAAGCTGAAACTGCAACCTG
AAGCAACCACGGTGCAGAAGACCGCATGCATGGTAAATGATTAAAAGGATATATATGGGCTCAACATCGCTGCCAAATCC
TGAGATAATGAACAGGCATGCTAAACTGCTACTTCCACATGAAACNTCCCAGTTGACATGAAGAATGAGCTGTTCAGTTT
TATGGTTTCTGTGTTGCACTGTACATAATTCCTGTACGGGTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis