Browse Element(s) Details


Os.13937.1.S1_at

Description gb:AK073511.1
DB_XREF= gi:32983534
TID=Os.13937.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.13937 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041I16, full insert sequence.
FL= gb:AK073511.1 gb:AK103992.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4881011/11peptidyl-prolyl cis-trans isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48750Os.9163.1.S1_at2/117+29182003..29186422Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os07g48760OsAffx.16766.1.S1_at11/117+29188672..29192485CIPK-like protein 1, putative, expressed
LOC_Os07g48770Os.5187.1.S1_at11/117+29193380..29195770expressed protein
LOC_Os07g48780Os.51736.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.182.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.57504.1.S1_x_at6/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48790Os.53516.1.S1_at11/117+29200303..292028635'-AMP-activated protein kinase, beta subunit, complex-interacting region containing protein, expressed
LOC_Os07g48800OsAffx.28959.1.S1_s_at11/117+29205241..29205849VQ motif family protein, expressed
LOC_Os07g48810Os.13937.1.S1_at11/117+29207863..29211082peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os07g48820Os.10220.1.S1_at11/117+29211788..29215712Transcription factor HBP-1b, putative, expressed
LOC_Os07g48830Os.2677.1.S1_at11/117+29218623..29220150galactinol synthase 3, putative, expressed
LOC_Os07g48840Os.31656.2.S1_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48840Os.31656.1.S1_x_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48850Os.31656.3.S1_at11/117+29226061..29231067pentatricopeptide, putative, expressed
LOC_Os07g48860OsAffx.5665.2.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_x_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_at11/117+29234631..29238860hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016853molecular_functionisomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13937.1.S1_at--94--5691Chr07:29209656..29209680 (25 bp)
GACATTCCACCAGAGGAGCTTCATG
LOC_Os07g48810
Os.13937.1.S1_at--522--6651Chr07:29209718..29209742 (25 bp)
GTTGATTGATGTTCGGGAGCCTGAT
LOC_Os07g48810
Os.13937.1.S1_at--1127--2291Chr07:29210164..29210188 (25 bp)
AAAGTTCTACCTCTTCGACAGTTTG
LOC_Os07g48810
Os.13937.1.S1_at--370--951Chr07:29210231..29210481 (25 bp)
AGGACACTTATGTTCTGTGCCACCA
LOC_Os07g48810
Os.13937.1.S1_at--123--8711Chr07:29210473..29210496 (24 bp)
TGTGCCACCATGGTATGCGCTCAAT
LOC_Os07g48810
Os.13937.1.S1_at--399--7491Chr07:29210671..29210695 (25 bp)
GTGGGATTCACGCTTATGCCGTTAA
LOC_Os07g48810
Os.13937.1.S1_at--88--10151Chr07:29210685..29210709 (25 bp)
TATGCCGTTAAAGCCGATTCTTCCA
LOC_Os07g48810
Os.13937.1.S1_at--34--3011Chr07:29210741..29210765 (25 bp)
AATGCAACGTCAGAGCCTTTTCTAC
LOC_Os07g48810
Os.13937.1.S1_at--431--9531Chr07:29210761..29210785 (25 bp)
TCTACGTGTTCGTTTTTCAGGCCAA
LOC_Os07g48810
Os.13937.1.S1_at--978--10491Chr07:29210865..29210889 (25 bp)
TTAAGTTTTGTCGTTCTCATGCTGC
LOC_Os07g48810
Os.13937.1.S1_at--255--7131Chr07:29210891..29210915 (25 bp)
GTCATGTACTAGCAGTTCTCTTGAA
LOC_Os07g48810
Target Sequence 
GACATTCCACCAGAGGAGCTTCATGCAAAAATGCAAGATCCTAACTTTCTTGAAGAAGCTCAGTTGATTGATGTTCGGGA
GCCTGATGAAGTAGATAAAGCTTCTCTTGAAGGGTTTAAAGTTCTACCTCTTCGACAGTTTGGAACTTGGGGACCAGTTA
TGACAGATGAATTTGATCCTCAGAAGGACACTTATGTTCTGTGCCACCATGGTATGCGCTCAATGCAGGTAGCTAAATGG
CTGCAATCACAGGGGTTCAGAAAAGTTTACAATGTTGCGGGTGGGATTCACGCTTATGCCGTTAAAGCCGATTCTTCCAT
CCCAACTTACTAGACATCTCCATGATCACCAATGCAACGTCAGAGCCTTTTCTACGTGTTCGTTTTTCAGGCCAAACCAA
AAGCATGCTTAGTATAGAATGATAGGATTTTCCACGATGATTTTGTACGGAATATCGGTACCAGAAATTCAGAGTTAAGT
TTTGTCGTTCTCATGCTGCTGTCATGTACTAGCAGTTCTCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis