Browse Element(s) Details


Os.17676.3.S1_x_at

Description gb:NM_185514.1
DB_XREF= gi:34898113
GEN=OJ1165_F02.12
TID=Os.17676.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17676 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative importin alpha 1 (OJ1165_F02.12), mRNA.
PROD=putative importin alpha 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4888011/11Importin alpha-1b subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48840Os.31656.2.S1_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48840Os.31656.1.S1_x_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48850Os.31656.3.S1_at11/117+29226061..29231067pentatricopeptide, putative, expressed
LOC_Os07g48860OsAffx.5665.2.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_x_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48860OsAffx.5665.1.S1_at11/117+29234631..29238860hypothetical protein
LOC_Os07g48870Os.32634.1.S1_at11/117+29240396..29241891Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g48880Os.17676.1.S1_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48880Os.17676.3.S1_x_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48880Os.17676.2.S1_at11/117+29245691..29250277Importin alpha-1b subunit, putative, expressed
LOC_Os07g48890OsAffx.16767.1.S1_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48890OsAffx.16767.2.S1_x_at11/117+29252797..29257705Poly polymerase central domain containing protein, expressed
LOC_Os07g48900NANA7+29259577..29260110hypothetical protein
LOC_Os07g48910NANA7+29266595..29268155transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g48920Os.16886.1.S1_at11/117+29269837..29276052aldehyde dehydrogenase family protein, expressed
LOC_Os07g48920Os.16886.2.S1_at3/117+29269837..29276052aldehyde dehydrogenase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005635cellular_componentnuclear envelope
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17676.3.S1_x_at--891--8771Chr07:29247710..29247734 (25 bp)
TGTTTCTAATATCTCCACTGGCAGC
LOC_Os07g48880
Os.17676.3.S1_x_at--183--6331Chr07:29247531..29247555 (25 bp)
GATGCAGATGTTATAAGCCCTCTCA
LOC_Os07g48880
Os.17676.3.S1_x_at--802--2651Chr07:29247517..29247541 (25 bp)
AAGCCCTCTCATTTTCCTATTAAAG
LOC_Os07g48880
Os.17676.3.S1_x_at--259--2291Chr07:29247448..29247472 (25 bp)
AAATGCTGCGTCTGGTGGTTCAAAT
LOC_Os07g48880
Os.17676.3.S1_x_at--1090--6271Chr07:29247271..29247295 (25 bp)
GATGTTTGGAGCCACTCTGCAATGT
LOC_Os07g48880
Os.17676.3.S1_x_at--644--6711Chr07:29247248..29247272 (25 bp)
GTTCTCACTTACCAAGATGCTGACC
LOC_Os07g48880
Os.17676.3.S1_x_at--814--6331Chr07:29247233..29247257 (25 bp)
GATGCTGACCTAGTATATGCGTGCC
LOC_Os07g48880
Os.17676.3.S1_x_at--1095--10131Chr07:29247218..29247242 (25 bp)
TATGCGTGCCTGGAAGGTCTTCAAA
LOC_Os07g48880
Os.17676.3.S1_x_at--841--3271Chr07:29247197..29247221 (25 bp)
CAAAACATACTTCAGGCGGGTGCAG
LOC_Os07g48880
Os.17676.3.S1_x_at--583--7751Chr07:29247147..29247171 (25 bp)
GGTGAACCCGTATGCACAGTTTATT
LOC_Os07g48880
Os.17676.3.S1_x_at--701--4971Chr07:29246957..29246981 (25 bp)
GCATCTGAAGATGCTGCGCAGCCAA
LOC_Os07g48880
Target Sequence 
TGTTTCTAATATCTCCACTGGCAGCAAGGATAATATTCAGGCAGTAATTGATGCAGATGTTATAAGCCCTCTCATTTTCC
TATTAAAGACCTCCGAGAAGGATATCAAGGAGGAAGCTGCTTGGGCTATATCAAATGCTGCGTCTGGTGGTTCAAATGAT
CAAATTCAATATTTGGTGAGTCGAGGATGTTTGGAGCCACTCTGCAATGTTCTCACTTACCAAGATGCTGACCTAGTATA
TGCGTGCCTGGAAGGTCTTCAAAACATACTTCAGGCGGGTGCAGTGGGGAAGCAGGGGCAGGGTTCCACGGTGAACCCGT
ATGCACAGTTTATTTTAGAATGTGGGGGTTTGGATAAACTGGAAGATCTGCAGGAAGTCGACAATGATGCCATTTACAAG
TTAGTCATGAAGTTGCTGGAGGGTTACTGGGACGAGGAAGTAAGTGATGATGACCCAAATTTACCAACTTCAAATGACTC
TGCAGAGACCGTGGAGACGGCATCTGAAGATGCTGCGCAGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17676.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis