Browse Element(s) Details


Os.34478.2.S1_x_at

Description gb:NM_185535.1
DB_XREF= gi:34898155
TID=Os.34478.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0597G07.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0597G07.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4900011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48980Os.1479.1.S1_at11/117+29321412..29322933Nicotianamine synthase 3, putative, expressed
LOC_Os07g48989NANA7+29327175..29327558NA
LOC_Os07g49000Os.34478.2.S1_x_at11/117+29337102..29339456DnaJ domain containing protein, expressed
LOC_Os07g49000Os.34478.1.S1_at11/117+29337102..29339456DnaJ domain containing protein, expressed
LOC_Os07g49000OsAffx.26408.1.S1_x_at2/117+29337102..29339456DnaJ domain containing protein, expressed
LOC_Os07g49010Os.27285.1.S1_at11/117+29341295..29349143BRCA1 C Terminus domain containing protein, expressed
LOC_Os07g49010Os.23591.1.A1_at1/117+29341295..29349143BRCA1 C Terminus domain containing protein, expressed
LOC_Os07g49020NANA7+29349956..29350222expressed protein
LOC_Os07g49030Os.7312.1.S1_a_at10/117+29351351..29355429PHD-finger family protein, expressed
LOC_Os07g49040Os.14932.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55724.1.S1_at11/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.55711.1.S1_at10/117+29361990..29368763protein phosphatase 2C, putative, expressed
LOC_Os07g49040Os.51367.1.S2_at1/117+29361990..29368763protein phosphatase 2C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34478.2.S1_x_at--295--911Chr07:29338498..29338522 (25 bp)
AGGCGTGCAGCGTGGACTACTACGC
LOC_Os07g49000
Os.34478.2.S1_x_at--301--771Chr07:29338683..29338707 (25 bp)
ATGTCGGCGCTGTCGCTGTACCGCA
LOC_Os07g49000
Os.34478.2.S1_x_at--135--4991Chr07:29338705..29338729 (25 bp)
GCATGCTGCAGAAGGGCTACTCGTT
LOC_Os07g49000
Os.34478.2.S1_x_at--220--1471Chr07:29338714..29338738 (25 bp)
AGAAGGGCTACTCGTTCATCATGTC
LOC_Os07g49000
Os.34478.2.S1_x_at--270--9611Chr07:29338729..29338753 (25 bp)
TCATCATGTCCGTCGTGCAGGACGA
LOC_Os07g49000
Os.34478.2.S1_x_at--628--4071Chr07:29338841..29338865 (25 bp)
CGAGCAAGAAGAGACCGCCGCCGTG
LOC_Os07g49000
Os.34478.2.S1_x_at--927--392Chr07:29338881..29338905 (25 bp)
ATCAGTAGTGTTAGTGTGCCTAGCA
LOC_Os07g49000
Os.34478.2.S1_x_at--1102--7271Chr07:29338896..29338920 (25 bp)
GTGCCTAGCACGAATGTTCAGGTTC
LOC_Os07g49000
Os.34478.2.S1_x_at--806--7891Chr07:29338916..29338940 (25 bp)
GGTTCAGGTAACTCAGGCAGCAGCA
LOC_Os07g49000
Os.34478.2.S1_x_at--678--3031Chr07:29338940..29338964 (25 bp)
AATGCCAACAGCTGCCATGGCGGCG
LOC_Os07g49000
Os.34478.2.S1_x_at--1045--8791Chr07:29338987..29339011 (25 bp)
TGTTCCAGGGCGTGTTCTGCCGCGA
LOC_Os07g49000
Target Sequence 
AGGCGTGCAGCGTGGACTACTACGCCCTCCTCGGTGTGCGCCGCGGTTGCACGCGGTCGGAGCTGGAGCGCGCGCACCTC
CTCCTGACGCTGAAGCTCAGGCCCGACCGGTGCGCGTCGTTCGCCGAGAGGCTGGAGCTCGTGGACGAGCACCGCGACCT
GGAGGCCGTGCGCGACCAGGCGCGCATGTCGGCGCTGTCGCTGTACCGCATGCTGCAGAAGGGCTACTCGTTCATCATGT
CCGTCGTGCAGGACGAGGAGGCCGCAGAGAGACAGAGGGCCAAGGACGCCGCCGCCGCCACCGCCGCGGCAGCAGCAGCA
GCCGCCGCGGCAGCGTTGGCGCGCGAGCAAGAAGAGACCGCCGCCGTGCCGGAGAAGGCCAGGATCAGTAGTGTTAGTGT
GCCTAGCACGAATGTTCAGGTTCAGGTAACTCAGGCAGCAGCAATGCCAACAGCTGCCATGGCGGCGGCGGCGGCGATGG
GAAGTCCGGTGTTCCAGGGCGTGTTCTGCCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34478.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis