Browse Element(s) Details


OsAffx.27990.1.S1_at

Description tigr:9634.m03673
TID=OsAffx.27990.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pectate lyase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3852011/11Pectate lyase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38470Os.10708.2.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_a_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.28463.1.S1_x_at1/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38480Os.54381.1.S1_at11/116+22806541..22808931retrotransposon protein, putative, unclassified, expressed
LOC_Os06g38490OsAffx.15822.1.S1_at11/116+22808654..22812272Leucine Rich Repeat family protein
LOC_Os06g38490Os.54901.1.S1_at1/116+22808654..22812272Leucine Rich Repeat family protein
LOC_Os06g38500NANA6+22816834..22817166hypothetical protein
LOC_Os06g38510Os.18224.1.S1_at11/116+22820120..22822391Pectate lyase precursor, putative, expressed
LOC_Os06g38520OsAffx.27990.1.S1_at11/116+22823679..22825322Pectate lyase family protein
LOC_Os06g38529NANA6+22828842..22829431NA
LOC_Os06g38540Os.20602.2.S1_x_at10/116+22832940..22835114hAT family dimerisation domain containing protein
LOC_Os06g38550Os.19238.2.S1_x_at11/116+22835897..22838543expressed protein
LOC_Os06g38550Os.19238.1.S1_a_at11/116+22835897..22838543expressed protein
LOC_Os06g38550Os.19238.1.S1_at10/116+22835897..22838543expressed protein
LOC_Os06g38564NANA6+22839364..22840687hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0016829molecular_functionlyase activity
GO:0030570molecular_functionpectate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27990.1.S1_at--359--371Chr06:22824372..22824396 (25 bp)
ATCAATAGCGACAAGACAATCGACA
LOC_Os06g38520
OsAffx.27990.1.S1_at--345--7591Chr06:22825008..22825032 (25 bp)
GGGAACCGGTACACTGCTCCACCGA
LOC_Os06g38520
OsAffx.27990.1.S1_at--1148--9091Chr06:22825022..22825046 (25 bp)
TGCTCCACCGAACCTGACGGCAAAG
LOC_Os06g38520
OsAffx.27990.1.S1_at--1106--5431Chr06:22825031..22825055 (25 bp)
GAACCTGACGGCAAAGCAGATCACG
LOC_Os06g38520
OsAffx.27990.1.S1_at--110--2731Chr06:22825044..22825068 (25 bp)
AAGCAGATCACGAAGCATCTCGGTG
LOC_Os06g38520
OsAffx.27990.1.S1_at--359--9691Chr06:22825051..22825075 (25 bp)
TCACGAAGCATCTCGGTGCGGCGGA
LOC_Os06g38520
OsAffx.27990.1.S1_at--38--3351Chr06:22825146..22825170 (25 bp)
CACGTCCGGCGATGCGACCCAGAAG
LOC_Os06g38520
OsAffx.27990.1.S1_at--1057--8371Chr06:22825153..22825177 (25 bp)
GGCGATGCGACCCAGAAGCAGTTCA
LOC_Os06g38520
OsAffx.27990.1.S1_at--205--551Chr06:22825246..22825270 (25 bp)
ATCCCGTGCACTCCCGGCAAGAAGT
LOC_Os06g38520
OsAffx.27990.1.S1_at--979--7331Chr06:22825251..22825275 (25 bp)
GTGCACTCCCGGCAAGAAGTGCTAG
LOC_Os06g38520
OsAffx.27990.1.S1_at--715--3231Chr06:22825263..22825287 (25 bp)
CAAGAAGTGCTAGACCGCGCGCGGC
LOC_Os06g38520
Target Sequence 
ATCAATAGCGACAAGACAATCGACAGGCGGGGAGCGCATGTGCGGATCACCAATGGCGTGCAGGTGACGGTGCAGAACTC
CAACAACGTGATCATCCACAACATCCACATCCACGACATCGTGCTCGGCAAGTTGGGGATGATCCGCGACTCGCTGGAGC
AGTTCGGCTTCCGCACCCAATGCCGATGGGGATATTTCCACGTGGTGAACAATGACTACACGCACTGGCTGATGTACGCC
ATCGGAGGGAGCAAGAACCCGACGATCATTAGCCAGGGGAACCGGTACACTGCTCCACCGAACCTGACGGCAAAGCAGAT
CACGAAGCATCTCGGTGCGGCGGAGGAGGAGTGGAAGAACTGGGTGTACATGGCACTTGGAGGAGGACCTGTTCATGGAG
GGGACCTACTTCACCACGTCCGGCGATGCGACCCAGAAGCAGTTCAGCAACAAGGACCTGATCAAGCCCAAGCCTGGATC
CTACGTCGCGAGGCTCACGCGCTTCGCCGGCTTCATCCCGTGCACTCCCGGCAAGAAGTGCTAGACCGCGCGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis