Browse Element(s) Details


Os.51797.1.S1_x_at

Description gb:AK063736.1
DB_XREF= gi:32973754
TID=Os.51797.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-F03, full insert sequence.
FL= gb:AK063736.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g384301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38380NANA6+22741847..22742218hypothetical protein
LOC_Os06g38390NANA6+22743905..22744279hypothetical protein
LOC_Os06g38400NANA6+22745470..22751074retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g38410NANA6+22754312..22757233retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38420Os.10703.2.S1_x_at1/116+22757549..22763659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38430Os.51681.1.S1_x_at11/116+22765884..22766567expressed protein
LOC_Os06g38430Os.51681.1.S1_at11/116+22765884..22766567expressed protein
LOC_Os06g38430Os.51797.1.S1_x_at1/116+22765884..22766567expressed protein
LOC_Os06g38440OsAffx.5045.1.S1_at11/116+22776169..22777114hypothetical protein
LOC_Os06g38450Os.35456.1.S1_at11/116+22778412..22780112Papain family cysteine protease containing protein, expressed
LOC_Os06g38460OsAffx.15821.2.S1_at11/116+22790491..22790871hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51797.1.S1_x_at--545--3991Chr09:16908953..16908977 (25 bp)
CGTGGAGAGAAGACCTTGACGGCTC
NONE
Os.51797.1.S1_x_at--123--10751Chr09:16908968..16908992 (25 bp)
TTGACGGCTCGACGCAAAGCACTCG
NONE
Os.51797.1.S1_x_at--929--10551Chr09:16909028..16909052 (25 bp)
TTCTTCTCCCTTTGCGGCGGTGGAG
NONE
Os.51797.1.S1_x_at--523--1051Chr09:16909067..16909091 (25 bp)
AGGTGGTCCCGCGATGCTGTAGATC
NONE
Os.51797.1.S1_x_at--635--10011Chr09:16909086..16909110 (25 bp)
TAGATCCGACCATCGGCGTGGTGGA
NONE
Os.51797.1.S1_x_at--547--10811Chr09:16909137..16909161 (25 bp)
TTGTAGGCGATGAGCGCACCAGCGA
NONE
Os.51797.1.S1_x_at--978--4571Chr09:16909150..16909174 (25 bp)
GCGCACCAGCGACAGCACAATGGGA
NONE
Os.51797.1.S1_x_at--1053--1631Chr09:16909157..16909181 (25 bp)
AGCGACAGCACAATGGGATATTTCT
NONE
Os.51797.1.S1_x_at--469--2971Chr09:16909168..16909192 (25 bp)
AATGGGATATTTCTGCTTGTGTTGA
NONE
Os.51797.1.S1_x_at--285--8131Chr09:16909185..16909209 (25 bp)
TGTGTTGAAAGTGCTATTGTTTGAC
NONE
Os.51797.1.S1_x_at--379--7732Chr09:16909236..16909260 (25 bp)
GGTGGACACAAATTTGTACCATGTA
NONE
Target Sequence 
CGTGGAGAGAAGACCTTGACGGCTCGACGCAAAGCACTCGCCCGCTGCTCGCGGCGCAAGAAAGGGGCGGCGTCCTTCTT
CTCCCTTTGCGGCGGTGGAGTAGAGAGGGGGCGGAGGTGGTCCCGCGATGCTGTAGATCCGACCATCGGCGTGGTGGATG
GAGGCGGCGAGCCGTTGGTCGTGGTTGTAGGCGATGAGCGCACCAGCGACAGCACAATGGGATATTTCTGCTTGTGTTGA
AAGTGCTATTGTTTGACATGTTTTTTTTTTGTTTTTTGTTTTTGGTGGACACAAATTTGTACCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51797.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis