Browse Element(s) Details


Os.10277.1.S1_at

Description gb:AK061551.1
DB_XREF= gi:32971569
TID=Os.10277.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10277 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B07, full insert sequence.
FL= gb:AK104764.1 gb:AK061551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g096549/11O-methyltransferase family protein, expressed
LOC_Os11g324701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09604Os.26569.1.S1_at9/114+5141927..5147482O-methyltransferase family protein, expressed
LOC_Os04g09620OsAffx.25944.1.S1_at11/114+5148842..5149852hypothetical protein
LOC_Os04g09630OsAffx.21465.1.S1_x_at2/114+5150374..5151027retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09640OsAffx.25945.1.S1_at10/114+5152796..5155297hypothetical protein
LOC_Os04g09654Os.10277.1.S1_at9/114+5158495..5166516O-methyltransferase family protein, expressed
LOC_Os04g09654Os.19369.1.S1_at1/114+5158495..5166516O-methyltransferase family protein, expressed
LOC_Os04g09670NANA4+5169870..5171591Caffeic acid 3-O-methyltransferase, putative, expressed
LOC_Os04g09680NANA4+5174012..5174764O-methyltransferase family protein
LOC_Os04g09690OsAffx.22368.1.S1_x_at1/114+5176458..5179414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09700NANA4+5180295..5182271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09710OsAffx.20565.1.S1_at1/114+5182907..5185834retrotransposon protein, putative, unclassified
LOC_Os04g09720OsAffx.13735.1.S1_at11/114+5187951..5196589Serine carboxypeptidase family protein, expressed
LOC_Os04g09720Os.5061.1.S1_s_at10/114+5187951..5196589Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10277.1.S1_at--898--431NONE
ATCTCTTCCGGGTGTGAATCATGTA
NONE
Os.10277.1.S1_at--286--5331NONE
GAAGTCGATGCTCCTACGAAACGAT
NONE
Os.10277.1.S1_at--766--6571Chr04:5166033..5166057 (25 bp)
GATTCTCAAGAACTGCCACTATGCT
LOC_Os04g09654
Os.10277.1.S1_at--698--2031Chr04:5166050..5166074 (25 bp)
ACTATGCTCTCTCAGACAATGGGAA
LOC_Os04g09654
Os.10277.1.S1_at--376--6652Chr11:18666236..18666256 (21 bp)
GTTGTTGATATTGTTCTCCCTGAAA
LOC_Os11g32470
Os.10277.1.S1_at--689--2591Chr04:5166133..5166157 (25 bp)
AACCCACTCCGGATGGACGTTATGA
LOC_Os04g09654
Os.10277.1.S1_at--1151--6331Chr04:5166156..5166180 (25 bp)
GATGCTCAACAATCTTCGTGGAGGA
LOC_Os04g09654
Os.10277.1.S1_at--976--4851Chr04:5166210..5166234 (25 bp)
GCTAGCTATGGATTCTGGCTTCAGT
LOC_Os04g09654
Os.10277.1.S1_at--491--8291Chr04:5166226..5166250 (25 bp)
GGCTTCAGTGGTTCCTTCCGGACAA
LOC_Os04g09654
Os.10277.1.S1_at--649--751Chr04:5166307..5166331 (25 bp)
ATGTCAAGTTCGTATTACTCCCTTC
LOC_Os04g09654
Os.10277.1.S1_at--187--391Chr04:5166332..5166356 (25 bp)
ATCACTAACTGAACTTTTGGCTATG
LOC_Os04g09654
Target Sequence 
ATCTCTTCCGGGTGTGAATCATGTAGCTGGAAATATGTTTGAGAGCGTACCTAAAGGAGATGCAATTTTCTTGAAGTCGA
TGCTCCTACGAAACGATGAGGAGTGCATCAAGATTCTCAAGAACTGCCACTATGCTCTCTCAGACAATGGGAAGGTGATT
GTTGTTGATATTGTTCTCCCTGAAACCCCAAAACCGGTACCCGAAGCACAAAACCCACTCCGGATGGACGTTATGATGCT
CAACAATCTTCGTGGAGGAAAGATAAGGACAGAGCAGGAGTACGCGAAGCTAGCTATGGATTCTGGCTTCAGTGGTTCCT
TCCGGACAACCTACATTTTCGCCAACTTTATGGCAATTGANCTATGCAAGTAGCTCTNGAAAATCATGTCAAGTTCGTAT
TACTCCCTTCATCACTAACTGAACTTTTGGCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis