Browse Element(s) Details


OsAffx.25944.1.S1_at

Description tigr:9632.m00831
TID=OsAffx.25944.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0962011/11hypothetical protein
LOC_Os09g373902/11Auxin responsive protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09590OsAffx.25987.2.S1_at11/114+5132099..5133394Transferase family protein
LOC_Os04g09604Os.26569.1.S1_at9/114+5141927..5147482O-methyltransferase family protein, expressed
LOC_Os04g09620OsAffx.25944.1.S1_at11/114+5148842..5149852hypothetical protein
LOC_Os04g09630OsAffx.21465.1.S1_x_at2/114+5150374..5151027retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09640OsAffx.25945.1.S1_at10/114+5152796..5155297hypothetical protein
LOC_Os04g09654Os.10277.1.S1_at9/114+5158495..5166516O-methyltransferase family protein, expressed
LOC_Os04g09654Os.19369.1.S1_at1/114+5158495..5166516O-methyltransferase family protein, expressed
LOC_Os04g09670NANA4+5169870..5171591Caffeic acid 3-O-methyltransferase, putative, expressed
LOC_Os04g09680NANA4+5174012..5174764O-methyltransferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25944.1.S1_at--881--794Chr11:28289894..28289916 (23 bp)
ATGGTACCTCACAGTACCTAGGTCT
NONE
OsAffx.25944.1.S1_at--51--6993Chr11:28289897..28290293 (25 bp)
GTACCTCACAGTACCTAGGTCTTTA
NONE
OsAffx.25944.1.S1_at--700--3731Chr04:5149650..5149807 (25 bp)
CTCACAGTACCTAGGTCTTTAGTTG
LOC_Os04g09620
OsAffx.25944.1.S1_at--149--3431Chr04:5149646..5149803 (25 bp)
CAGTACCTAGGTCTTTAGTTGGACA
LOC_Os04g09620
OsAffx.25944.1.S1_at--502--9931Chr04:5149643..5149746 (25 bp)
TACCTAGGTCTTTAGTTGGACAGCC
LOC_Os04g09620
OsAffx.25944.1.S1_at--666--1011Chr04:5149638..5149662 (25 bp)
AGGTCTTTAGTTGGACAGCCCAGGG
LOC_Os04g09620
OsAffx.25944.1.S1_at--797--7551Chr04:5149615..5149639 (25 bp)
GGGCCAGGGCATTAGAATCTATGAT
LOC_Os04g09620
OsAffx.25944.1.S1_at--503--5251Chr04:5149601..5149625 (25 bp)
GAATCTATGATAGCTCATGCAATTT
LOC_Os04g09620
OsAffx.25944.1.S1_at--498--6491Chr04:5149593..5149617 (25 bp)
GATAGCTCATGCAATTTTGAGCAGA
LOC_Os04g09620
OsAffx.25944.1.S1_at--1012--5931Chr04:5149579..5149599 (21 bp)
GAGCAGATATATGTTTATGATAAAG
LOC_Os04g09620
OsAffx.25944.1.S1_at--776--971Chr04:5148872..5148896 (25 bp)
AGGAGTTGATAGGATCCTCTGTTAC
LOC_Os04g09620
Target Sequence 
ATGGTACCTCACAGTACCTAGGTCTTTAGTTGGACAGCCCAGGGGCCAGGGCATTAGAATCTATGATAGCTCATGCAATT
TTGAGCAGATATATGTTTATGATAAAGGAGTTGATAGGATCCTCTGTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis