Browse Element(s) Details


Os.19369.1.S1_at

Description gb:AK109534.1
DB_XREF= gi:32994743
TID=Os.19369.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-C08, full insert sequence.
FL= gb:AK109534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0599011/11No apical meristem protein, expressed
LOC_Os04g096541/11O-methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05940OsAffx.8606.1.S1_s_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31603.1.S1_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31255.1.S1_at1/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05950OsAffx.19511.1.S1_at11/1112+2740006..2740426hypothetical protein
LOC_Os12g05960OsAffx.31604.1.S1_at11/1112+2743306..2744085hypothetical protein
LOC_Os12g05970OsAffx.7496.1.S1_at11/1112+2746577..2749107hypothetical protein
LOC_Os12g05980NANA12+2750933..2751430hypothetical protein
LOC_Os12g05990Os.19369.1.S1_at11/1112+2761324..2762601No apical meristem protein, expressed
LOC_Os12g06010Os.2235.1.S1_a_at11/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06010Os.2235.3.S1_x_at9/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06010Os.57499.1.S1_x_at1/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06010Os.52007.1.S1_at1/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06020Os.18097.1.S1_at11/1112+2779560..2782698Dcp1-like decapping family protein, expressed
LOC_Os12g06030NANA12+2783459..2784442F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009809biological_processlignin biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0003700molecular_functiontranscription factor activity
GO:0008171molecular_functionO-methyltransferase activity
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19369.1.S1_at--349--2471Chr12:2762159..2762183 (25 bp)
AACAACAACGTCAGCTGCCATCGTC
LOC_Os12g05990
Os.19369.1.S1_at--234--7691Chr12:2762230..2762254 (25 bp)
GGGTACGAGTGCTCACACGACAGCT
LOC_Os12g05990
Os.19369.1.S1_at--1043--2791Chr12:2762270..2762294 (25 bp)
AAGATGCCGCCATCGACTGGAGCTC
LOC_Os12g05990
Os.19369.1.S1_at--753--2591Chr12:2762347..2762371 (25 bp)
AACGACGACATCGATTTCAGCCCTG
LOC_Os12g05990
Os.19369.1.S1_at--565--4551Chr12:2762381..2762405 (25 bp)
GCCCATGGGCGCCACAGCTTTGATT
LOC_Os12g05990
Os.19369.1.S1_at--197--7351Chr12:2762418..2762442 (25 bp)
GTGCACACTGCATAATAACTGAATT
LOC_Os12g05990
Os.19369.1.S1_at--255--7072Chr12:2762460..2762484 (25 bp)
GTAAGTTTGATCAGTGCTTGCTAAT
LOC_Os12g05990
Os.19369.1.S1_at--16--7431Chr12:2762492..2762516 (25 bp)
GTGTTCTATGTTCAGGTCAACTCGA
LOC_Os12g05990
Os.19369.1.S1_at--888--10772Chr12:2762517..2762541 (25 bp)
TTGATTTATTACCTCCCAAACTCTC
LOC_Os12g05990
Os.19369.1.S1_at--246--2551Chr12:2762535..2762559 (25 bp)
AACTCTCAATTCTGCTTGTCTTTAA
LOC_Os12g05990
Os.19369.1.S1_at--895--3851Chr12:2762577..2762601 (25 bp)
CTGAACTATGGCCTGTTCTTTTCTT
LOC_Os12g05990
Target Sequence 
AACAACAACGTCAGCTGCCATCGTCGGCAGCGGCGGCGGCGACGAACGGCAACCTCATCGCCCTNCGCCGGCGGGTACGA
GTGCTCACACGACAGCTCCGGTGGCTCGTCGGAAGATGCCGCCATCGACTGGAGCTCGCTGATTACCGCCGCCACCGATT
CCGCTACCGCCGCCGTTGATTTCAGCTTCAACGACGACATCGATTTCAGCCCTGCCGCTGTTGGCCCATGGGCGCCACAG
CTTTGATTGATTGATNATTTGTGCACACTGCATAATAACTGAATTACTAGTAATTNAGTAGTAGTAAGTTTGATCAGTGC
TTGCTAATTNCCATAGTGTTCTATGTTCAGGTCAACTCGATTGATTTATTACCTCCCAAACTCTCAATTCTGCTTGTCTT
TAATTTTTCTTGAATAAATTCTGAACTATGGCCTGTTCTTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis