Browse Element(s) Details


Os.18097.1.S1_at

Description gb:AK072086.1
DB_XREF= gi:32982109
TID=Os.18097.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.18097 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023125D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116L20, full insert sequence.
FL= gb:AK072086.1 gb:AK099278.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0602011/11Dcp1-like decapping family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05990Os.19369.1.S1_at11/1112+2761324..2762601No apical meristem protein, expressed
LOC_Os12g06010Os.2235.1.S1_a_at11/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06010Os.2235.3.S1_x_at9/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06010Os.57499.1.S1_x_at1/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06010Os.52007.1.S1_at1/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06020Os.18097.1.S1_at11/1112+2779560..2782698Dcp1-like decapping family protein, expressed
LOC_Os12g06030NANA12+2783459..2784442F-box domain containing protein
LOC_Os12g06040Os.14919.1.S1_at5/1112+2793026..2800777transposon protein, putative, Mutator sub-class
LOC_Os12g06040Os.56216.1.S1_at1/1112+2793026..2800777transposon protein, putative, Mutator sub-class
LOC_Os12g06040OsAffx.10837.1.S1_at1/1112+2793026..2800777transposon protein, putative, Mutator sub-class
LOC_Os12g06040OsAffx.29313.1.S1_at1/1112+2793026..2800777transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18097.1.S1_at--544--511Chr12:2781986..2782010 (25 bp)
ATCGTCTTCTGCATCATTGGTGGCA
LOC_Os12g06020
Os.18097.1.S1_at--890--1531Chr12:2782076..2782100 (25 bp)
AGCATATGGACATGGTACACCCCTT
LOC_Os12g06020
Os.18097.1.S1_at--213--2051Chr12:2782136..2782160 (25 bp)
ACTTACCCCTGTACACAACGATGAG
LOC_Os12g06020
Os.18097.1.S1_at--884--2331Chr12:2782185..2782209 (25 bp)
AAAGATGCTCTCCTGAGGCTTGTTC
LOC_Os12g06020
Os.18097.1.S1_at--115--1411Chr12:2782345..2782369 (25 bp)
AGACTGCTTACTCAGCCTTTATGGA
LOC_Os12g06020
Os.18097.1.S1_at--550--8451Chr12:2782375..2782399 (25 bp)
TGGCCTTGACGAGAGTTCACCTGTT
LOC_Os12g06020
Os.18097.1.S1_at--488--10511Chr12:2782390..2782414 (25 bp)
TTCACCTGTTCTTTCGTAGTTTTGT
LOC_Os12g06020
Os.18097.1.S1_at--1000--6931Chr12:2782405..2782429 (25 bp)
GTAGTTTTGTGTGCTTTAGTTCTCA
LOC_Os12g06020
Os.18097.1.S1_at--1083--4871Chr12:2782444..2782468 (25 bp)
GCTTTGGCTTCTTTTTATATCGGAT
LOC_Os12g06020
Os.18097.1.S1_at--176--1351Chr12:2782477..2782501 (25 bp)
AGAGATTGTGCAGCTTTGTCTTGAT
LOC_Os12g06020
Os.18097.1.S1_at--979--5391Chr12:2782603..2782627 (25 bp)
GAAGCTGGACTATGTGTGGCAACGT
LOC_Os12g06020
Target Sequence 
ATCGTCTTCTGCATCATTGGTGGCACCAGCTTCATCCTTTATGCCCACAGCATCACCTTTTCATCCAACTTCTGCCGATG
CTCACCGTCCAGCATATGGACATGGTACACCCCTTNTTCAACCCCTTCCGCCGCCAACACCACCTGCATCACTTACCCCT
GTACACAACGATGAGCCTGTTATTTCGAGGGATAAAGTTAAAGATGCTCTCCTGAGGCTTGTTCAGAACGACGAATTCAT
CAATTTGCTCTATCAGGAGTTACAGAATGCACATGCGTAGACTGCTTACTCAGCCTTTATGGAGTGTCTGGCCTTGACGA
GAGTTCACCTGTTCTTTCGTAGTTTTGTGTGCTTTAGTTCTCAAAACTTTATGTACAGCTTTGGCTTCTTTTTATATCGG
ATGTCCGCGAAGAGATTGTGCAGCTTTGTCTTGATGCATTATTGATGTAGAGTTTTTATAGCAATGGCTGGTAGTATTTC
TTCCAAATGGTTGTACTTGTATAGTATTTTTGTTTCCTGTTGGAAACTCGAAATCGGAAGCTGGACTATGTGTGGCAACG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis