Browse Element(s) Details


Os.2235.1.S1_a_at

Description gb:AY333186.1
DB_XREF= gi:33465890
TID=Os.2235.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2235 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) bZIP-like protein mRNA, complete cds.
PROD=bZIP-like protein
FL= gb:AY333186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0601011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05960OsAffx.31604.1.S1_at11/1112+2743306..2744085hypothetical protein
LOC_Os12g05970OsAffx.7496.1.S1_at11/1112+2746577..2749107hypothetical protein
LOC_Os12g05980NANA12+2750933..2751430hypothetical protein
LOC_Os12g05990Os.19369.1.S1_at11/1112+2761324..2762601No apical meristem protein, expressed
LOC_Os12g06010Os.2235.1.S1_a_at11/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06010Os.2235.3.S1_x_at9/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06010Os.57499.1.S1_x_at1/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06010Os.52007.1.S1_at1/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06020Os.18097.1.S1_at11/1112+2779560..2782698Dcp1-like decapping family protein, expressed
LOC_Os12g06030NANA12+2783459..2784442F-box domain containing protein
LOC_Os12g06040Os.14919.1.S1_at5/1112+2793026..2800777transposon protein, putative, Mutator sub-class
LOC_Os12g06040Os.56216.1.S1_at1/1112+2793026..2800777transposon protein, putative, Mutator sub-class
LOC_Os12g06040OsAffx.10837.1.S1_at1/1112+2793026..2800777transposon protein, putative, Mutator sub-class
LOC_Os12g06040OsAffx.29313.1.S1_at1/1112+2793026..2800777transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2235.1.S1_a_at--53--9711Chr12:2774988..2775012 (25 bp)
TCAAACCGGCCATGCAGCTGCAGCT
LOC_Os12g06010
Os.2235.1.S1_a_at--383--9911Chr12:2775404..2775538 (25 bp)
TACTCCGCCGTCAGGCTATTAGAGA
LOC_Os12g06010
Os.2235.1.S1_a_at--1102--4871Chr12:2775528..2775552 (25 bp)
GCTATTAGAGATGAACTGGCAAGAA
LOC_Os12g06010
Os.2235.1.S1_a_at--223--3911Chr12:2775543..2775567 (25 bp)
CTGGCAAGAAAGGTCGCAGATCTGT
LOC_Os12g06010
Os.2235.1.S1_a_at--447--2311Chr12:2775551..2775575 (25 bp)
AAAGGTCGCAGATCTGTCAACACAG
LOC_Os12g06010
Os.2235.1.S1_a_at--633--3871Chr12:2775564..2775588 (25 bp)
CTGTCAACACAGAATGAGAGCATGA
LOC_Os12g06010
Os.2235.1.S1_a_at--346--5651Chr12:2775696..2775720 (25 bp)
GACAGTGATGCAGGAGTACCTCTCA
LOC_Os12g06010
Os.2235.1.S1_a_at--1069--3231Chr12:2775735..2775759 (25 bp)
CAAGCAGCTCAAAGAACAGGCACAG
LOC_Os12g06010
Os.2235.1.S1_a_at--35--9711Chr12:2775743..2775767 (25 bp)
TCAAAGAACAGGCACAGCATCATCT
LOC_Os12g06010
Os.2235.1.S1_a_at--357--2151Chr12:2775756..2775780 (25 bp)
ACAGCATCATCTTTCGCTTTCCTTG
LOC_Os12g06010
Os.2235.1.S1_a_at--1038--3751Chr12:2775792..2775816 (25 bp)
CTCTTAGTAGTATAATCTTCTTCTT
LOC_Os12g06010
Target Sequence 
TCAAACCGGCCATGCAGCTGCAGCTGCAGCCGACCGCCGCTCAGGAGGAGGACGAGGAGATGGCGACCACGAGGCTGAGC
CTTCAGCTCGGCAACAACGTCGGCAGCATCATCCAGTCCTCCTCCTGCTCCAGCAGCGGCTCCAGCGCCGGCCTCCCCGC
GCCACCGCCGCCGCCGCCGCCGGCCACCGCCTACGGCACCAAGCCCCTCCACATGCTCACCGAGGAGGAGAAGGAGGCGA
AGCGGCTGCGGCGAGTGCTCGCCAACCGGGAATCCGCACGCCAAACCATACTCCGCCGTCAGGCTATTAGAGATGAACTG
GCAAGAAAGGTCGCAGATCTGTCAACACAGAATGAGAGCATGAAGAAGCTTAAGCTGGCAATTAACAGTAATGATGTTGT
GTTTGGGGGTGCAGGAGAGGGAGACAGTGATGCAGGAGTACCTCTCACTGAAGGAGACAAACAAGCAGCTCAAAGAACAG
GCACAGCATCATCTTTCGCTTTCCTTGTNCTANTTAATCTCTTAGTAGTATAATCTTCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2235.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis