Browse Element(s) Details


OsAffx.10837.1.S1_at

Description gb:AK064531.1
DB_XREF= gi:32974549
TID=OsAffx.10837.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-H03, full insert sequence.
FL= gb:AK064531.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g339604/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g060401/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33930OsAffx.23500.1.S1_at11/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.23500.1.S1_x_at11/111+18985940..18992315expressed protein
LOC_Os01g33930Os.26912.1.A1_x_at7/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.14629.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33930Os.10728.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33940OsAffx.21174.2.S1_x_at8/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.1.S1_at5/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.2.S1_at4/111+18993085..18994720hypothetical protein
LOC_Os01g33950OsAffx.23501.1.S1_x_at11/111+18998075..19002520Leucine Rich Repeat family protein, expressed
LOC_Os01g33950OsAffx.23501.2.S1_at9/111+18998075..19002520Leucine Rich Repeat family protein, expressed
LOC_Os01g33960OsAffx.32312.1.A1_at10/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.2.S1_x_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.2.S1_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.10837.1.S1_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.5.S1_x_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.1869.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19842.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19421.2.S1_at2/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.4.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.31898.1.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.32283.1.A1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.20497.1.S1_at3/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.21754.1.S1_x_at2/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.22387.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.3348.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.31287.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.9949.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33980NANA1+19029112..19029333hypothetical protein
LOC_Os01g33990OsAffx.23502.2.S1_at6/111+19030303..19033308transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34000OsAffx.21172.1.S1_at10/111+19037627..19038616hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10837.1.S1_at--1162--9071Chr01:19011037..19011061 (25 bp)
TGCTCGTACGGTTCATAGTTGGGTA
LOC_Os01g33960
OsAffx.10837.1.S1_at--137--6631NONE
GTTGGGAACGTCTTCTATATTCGAA
NONE
OsAffx.10837.1.S1_at--481--7151Chr01:19010908..19010932 (25 bp)
GTCTTATTCTTATTGTGCGCCTTGT
LOC_Os01g33960
OsAffx.10837.1.S1_at--301--10831Chr01:19010887..19010911 (25 bp)
TTGTGAGCACGTTTGGATCCGCGAA
LOC_Os01g33960
OsAffx.10837.1.S1_at--455--6372Chr12:2800800..2800830 (25 bp)
GATCCGCGAAGGCAATCGCTCGGAT
NONE
OsAffx.10837.1.S1_at--179--5452Chr10:7816459..7816483 (25 bp)
GAACCGCAGCATGAGGAATGTCCAC
NONE
OsAffx.10837.1.S1_at--757--8171Chr07:13500863..13500887 (25 bp)
GGCACAAGGGTCCTGGTACTACCCA
NONE
OsAffx.10837.1.S1_at--1012--9931NONE
TACCCAGGTGCGAAGAACCCCGGAG
NONE
OsAffx.10837.1.S1_at--14--2611Chr07:13500829..13500938 (25 bp)
AACCCCGGAGGTGACTGCAATGAGC
NONE
OsAffx.10837.1.S1_at--205--1492Chr05:7920406..7920428 (23 bp)
AGCAAAAATGTCACTCACCGGCCTA
NONE
OsAffx.10837.1.S1_at--1100--1451Chr02:12182648..12182672 (25 bp)
AGAAGTGGCGGTCCGAATCCACTCT
NONE
Target Sequence 
TGCTCGTACGGTTCATAGTTGGGTATGATATTCTCGTGGATTGTTGGGAACGTCTTCTATATTCGAAATATGCCTTTCTA
GGAGCATTACGATCTGCAGCTCAAATGGTCTCTTATGAAGTCTCTATTGGTCTTATTCTTATTGTGCGCCTTGTGAGCAC
GTTTGGATCCGCGAAGGCAATCGCTCGGATCTTCCCCTAACCCAACCCGGGAACGGACCAGAGGGAACCGCAGCATGAGG
AATGTCCACGTCTCGTCGCAAGGCTCATTTTTAGTTTTGGGTCATAGGGCGGGCAGTGCAGTCCGGGGCACAAGGGTCCT
GGTACTACCCAGGTGCGAAGAACCCCGGAGGTGACTGCAATGAGCAAAAATGTCACTCACCGGCCTAAACGACGAGCAAA
CACTCGAACGTGAGAGCAAGGGATCACCCAACGAATGGGCGACCCCCAAGGAGGGGGGAGAGAGGGAGGCAAGAACCATG
CTTTCAGAGAAGTGGCGGTCCGAATCCACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis