Browse Element(s) Details


Os.26912.1.A1_x_at

Description gb:CB627985
DB_XREF= gi:29622974
DB_XREF=OSIIEb03E11.f
CLONE=OSIIEb03E11
TID=Os.26912.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26912 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0516D04.17 (P0516D04.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g339307/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33869OsAffx.23497.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869Os.50839.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.2147.1.A1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_x_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8937.1.S1_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_at5/111+18952967..18968608expressed protein
LOC_Os01g33869Os.27440.1.S1_at4/111+18952967..18968608expressed protein
LOC_Os01g33869Os.17937.3.S1_at1/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.25952.1.S1_s_at1/111+18952967..18968608expressed protein
LOC_Os01g33900NANA1+18976867..18977097hypothetical protein
LOC_Os01g33910OsAffx.11307.1.S1_at11/111+18979073..18979777hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_x_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33930OsAffx.23500.1.S1_at11/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.23500.1.S1_x_at11/111+18985940..18992315expressed protein
LOC_Os01g33930Os.26912.1.A1_x_at7/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.14629.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33930Os.10728.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33940OsAffx.21174.2.S1_x_at8/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.1.S1_at5/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.2.S1_at4/111+18993085..18994720hypothetical protein
LOC_Os01g33950OsAffx.23501.1.S1_x_at11/111+18998075..19002520Leucine Rich Repeat family protein, expressed
LOC_Os01g33950OsAffx.23501.2.S1_at9/111+18998075..19002520Leucine Rich Repeat family protein, expressed
LOC_Os01g33960OsAffx.32312.1.A1_at10/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.2.S1_x_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.2.S1_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.10837.1.S1_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.5.S1_x_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.1869.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19842.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19421.2.S1_at2/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.4.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.31898.1.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.32283.1.A1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26912.1.A1_x_at--276--9931Chr01:18991724..18991748 (25 bp)
TACTGGAGTCCTTTATTGGGCTCAC
LOC_Os01g33930
Os.26912.1.A1_x_at--786--31Chr01:18991738..18991762 (25 bp)
ATTGGGCTCACCGTGCAAATTTGCA
LOC_Os01g33930
Os.26912.1.A1_x_at--303--831Chr01:18991777..18991801 (25 bp)
ATGGTTTTCACCGATGCACTCAGGA
LOC_Os01g33930
Os.26912.1.A1_x_at--781--2451NONE
AACAATTGATGAGTTCGTGCTGAAG
NONE
Os.26912.1.A1_x_at--896--2551Chr01:18991851..18991875 (25 bp)
AACTGTGTACAAGTCTCCAACTGCT
LOC_Os01g33930
Os.26912.1.A1_x_at--426--7171Chr01:18991863..18991887 (25 bp)
GTCTCCAACTGCTGATTTTCCAGGG
LOC_Os01g33930
Os.26912.1.A1_x_at--284--5431NONE
GAACCCGGCGTATGTTGTGGTGTTT
NONE
Os.26912.1.A1_x_at--542--10351NONE
TTTTTGTTGTTCCATTCCGGTGTTG
NONE
Os.26912.1.A1_x_at--706--91NONE
ATTCCGGTGTTGGTGCTTTTGAGCA
NONE
Os.26912.1.A1_x_at--353--6111Chr01:18992062..18992086 (25 bp)
GAGTCCATTTCTAGTATTGTGAGCA
LOC_Os01g33930
Os.26912.1.A1_x_at--346--9871Chr01:18992103..18992127 (25 bp)
TACAGGTAGTTTTGCTTAAGGAGCC
LOC_Os01g33930
Target Sequence 
TACTGGAGTCCTTTATTGGGCTCACCGTGCAAATTTGCACCAACGGGGATGAAATGGTTTTCACCGATGCACTCAGGAGT
GCCAATATAACAATTGATGAGTTCGTGCTGAAGCTTAAGATGATATTAACTGTGTACAAGTCTCCAACTGCTGATTTTCC
AGGGGTAAGAAGGGTTGTAATTCAGCAAATGAATTGGATGATGGAAAAGAACCCGGCGTATGTTGTGGTGTTTAAGAAAC
ACGAAATGGACATCATACTTAAAGAAACAGCAGAGACGGCAACAAAGATTGAAAACTTTTTGTTGTTCCATTCCGGTGTT
GGTGCTTTTGAGCATGAAGAGTCCATTTCTAGTATTGTGAGCAAGTCACTGGGACTGATTACAGGTAGTTTTGCTTAAGG
AGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26912.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis