Browse Element(s) Details


Os.50839.1.S1_at

Description gb:AK058902.1
DB_XREF= gi:32968920
TID=Os.50839.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50839 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-008-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B03, full insert sequence.
FL= gb:AK058902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3386911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33800Os.7307.2.S1_s_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_a_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.2.S1_x_at10/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800OsAffx.11306.1.S1_at1/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33810OsAffx.11305.1.S1_at11/111+18940590..18943406NB-ARC domain containing protein, expressed
LOC_Os01g33820OsAffx.23496.1.S1_at11/111+18944296..18944744hypothetical protein
LOC_Os01g33830OsAffx.2146.2.A1_at11/111+18947621..18948109hypothetical protein
LOC_Os01g33840Os.7307.2.S1_s_at11/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33840OsAffx.11306.1.S1_at9/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33869OsAffx.23497.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869Os.50839.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.2147.1.A1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_x_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8937.1.S1_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_at5/111+18952967..18968608expressed protein
LOC_Os01g33869Os.27440.1.S1_at4/111+18952967..18968608expressed protein
LOC_Os01g33869Os.17937.3.S1_at1/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.25952.1.S1_s_at1/111+18952967..18968608expressed protein
LOC_Os01g33900NANA1+18976867..18977097hypothetical protein
LOC_Os01g33910OsAffx.11307.1.S1_at11/111+18979073..18979777hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_x_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33930OsAffx.23500.1.S1_at11/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.23500.1.S1_x_at11/111+18985940..18992315expressed protein
LOC_Os01g33930Os.26912.1.A1_x_at7/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.14629.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33930Os.10728.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33940OsAffx.21174.2.S1_x_at8/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.1.S1_at5/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.2.S1_at4/111+18993085..18994720hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50839.1.S1_at--1048--2431Chr01:18953379..18953403 (25 bp)
AAAAGTGCTGGCTTGTTCTTGGGCA
LOC_Os01g33869
Os.50839.1.S1_at--155--10771Chr01:18953391..18953415 (25 bp)
TTGTTCTTGGGCACTCGATCACAAG
LOC_Os01g33869
Os.50839.1.S1_at--722--8651Chr01:18953424..18953448 (25 bp)
TGGGCGTCCCATGGCTACAGGCAGT
LOC_Os01g33869
Os.50839.1.S1_at--498--1131Chr01:18953446..18953470 (25 bp)
AGTGCCCCTCTTTCACTGTGAATAG
LOC_Os01g33869
Os.50839.1.S1_at--1044--1931Chr01:18953460..18953484 (25 bp)
ACTGTGAATAGCCTGCACACGCCAG
LOC_Os01g33869
Os.50839.1.S1_at--1142--4991Chr01:18953511..18953535 (25 bp)
GCATGTGTGTGTATCGCTCTAACGA
LOC_Os01g33869
Os.50839.1.S1_at--322--3071Chr01:18953649..18953673 (25 bp)
AATCACTTAGATCCGTACTTTCCTT
LOC_Os01g33869
Os.50839.1.S1_at--990--9211Chr01:18953669..18953693 (25 bp)
TCCTTTCTCAAAACTTCGGCAAACT
LOC_Os01g33869
Os.50839.1.S1_at--614--10551Chr01:18953741..18953765 (25 bp)
TTCTTCTTTTACTAGTCTCCCCTTG
LOC_Os01g33869
Os.50839.1.S1_at--1135--9691Chr01:18953827..18953851 (25 bp)
TCACACGTTGTGACCGATGATGGAT
LOC_Os01g33869
Os.50839.1.S1_at--991--8171Chr01:18953859..18953883 (25 bp)
GGAAGCCCATTAAGATTTTTCTACA
LOC_Os01g33869
Target Sequence 
AAAAGTGCTGGCTTGTTCTTGGGCACTCGATCACAAGAGAAAAATTGGGCGTCCCATGGCTACAGGCAGTGCCCCTCTTT
CACTGTGAATAGCCTGCACACGCCAGCCCCTCTCTCTCCTATGCATGCATGCATGTGTGTGTATCGCTCTAACGAGTTTC
AAATATTTTCCCTTAAATTAGTTATTATCTCACATATGATCCAATTACACCCATATTTATTAAATTACTAGAAAAAATAT
CCATGCGTTGCAACGGGAAAATACCTTAAATCACTTAGATCCGTACTTTCCTTTCTCAAAACTTCGGCAAACTCAATTTG
AAAATTTGAAAGCGAATTCAACTTTCCCTTTTGAATTACTTTCTTCTTTTACTAGTCTCCCCTTGTTTAAAATTCGTTTA
AATTCTCGTATATCAAAATTCACTAAAGATACAAAAGTCCATATAATCACACGTTGTGACCGATGATGGATGAAAAACGG
AAGCCCATTAAGATTTTTCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis