Browse Element(s) Details


OsAffx.23496.1.S1_at

Description tigr:9629.m03171
TID=OsAffx.23496.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3382011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33784Os.17777.1.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.1.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33800Os.7307.2.S1_s_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_a_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.2.S1_x_at10/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800OsAffx.11306.1.S1_at1/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33810OsAffx.11305.1.S1_at11/111+18940590..18943406NB-ARC domain containing protein, expressed
LOC_Os01g33820OsAffx.23496.1.S1_at11/111+18944296..18944744hypothetical protein
LOC_Os01g33830OsAffx.2146.2.A1_at11/111+18947621..18948109hypothetical protein
LOC_Os01g33840Os.7307.2.S1_s_at11/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33840OsAffx.11306.1.S1_at9/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33869OsAffx.23497.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869Os.50839.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.2147.1.A1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_x_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8937.1.S1_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_at5/111+18952967..18968608expressed protein
LOC_Os01g33869Os.27440.1.S1_at4/111+18952967..18968608expressed protein
LOC_Os01g33869Os.17937.3.S1_at1/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.25952.1.S1_s_at1/111+18952967..18968608expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23496.1.S1_at--442--871Chr01:18944339..18944363 (25 bp)
ATGGCGATGGTGTCCCTCTCATGCT
LOC_Os01g33820
OsAffx.23496.1.S1_at--495--811Chr01:18944345..18944369 (25 bp)
ATGGTGTCCCTCTCATGCTATGGCT
LOC_Os01g33820
OsAffx.23496.1.S1_at--18--9611Chr01:18944357..18944381 (25 bp)
TCATGCTATGGCTCCAAGGTGGTGG
LOC_Os01g33820
OsAffx.23496.1.S1_at--988--571Chr01:18944422..18944446 (25 bp)
ATCCATGGCCGCCTTGGCCAGATTT
LOC_Os01g33820
OsAffx.23496.1.S1_at--1147--4411Chr01:18944438..18944587 (25 bp)
GCCAGATTTGGCCAGTGACGGTCCA
LOC_Os01g33820
OsAffx.23496.1.S1_at--1057--3451Chr01:18944575..18944599 (25 bp)
CAGTGACGGTCCAGGTGTGCAGTAA
LOC_Os01g33820
OsAffx.23496.1.S1_at--620--7251Chr01:18944583..18944607 (25 bp)
GTCCAGGTGTGCAGTAAGTCGTTCA
LOC_Os01g33820
OsAffx.23496.1.S1_at--663--931Chr01:18944595..18944619 (25 bp)
AGTAAGTCGTTCACCCCTCTGTTGG
LOC_Os01g33820
OsAffx.23496.1.S1_at--600--3651Chr01:18944651..18944675 (25 bp)
CTTCTATGGTCGATCTGCTTCCATA
LOC_Os01g33820
OsAffx.23496.1.S1_at--1083--811Chr01:18944656..18944680 (25 bp)
ATGGTCGATCTGCTTCCATATTGGG
LOC_Os01g33820
OsAffx.23496.1.S1_at--758--3571Chr01:18944672..18944696 (25 bp)
CATATTGGGTCATTGGGAGCTCCGT
LOC_Os01g33820
Target Sequence 
ATGGCGATGGTGTCCCTCTCATGCTATGGCTCCAAGGTGGTGGATGGCCAGGGTCGGCGGCCCGAGCTTCAGGGAGGGGT
CAGATCCATGGCCGCCTTGGCCAGATTTGGCCAGTGACGGTCCAGGTGTGCAGTAAGTCGTTCACCCCTCTGTTGGCCAA
CATTCTCCCCTCCATGTTGCTCCTCCCCTTCTATGGTCGATCTGCTTCCATATTGGGTCATTGGGAGCTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis