Browse Element(s) Details


Os.17777.2.S1_at

Description gb:BI813567
DB_XREF= gi:16579472
DB_XREF=K014C11
CLONE=K014C11
TID=Os.17777.2
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0516D04.2 (P0516D04.2), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3378411/11lipase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33740NANA1+18892531..18898374retrotransposon protein, putative, unclassified
LOC_Os01g33750OsAffx.5284.1.S1_at1/111+18900988..18906693retrotransposon protein, putative, unclassified
LOC_Os01g33760OsAffx.23494.1.S1_at10/111+18908869..18910085hypothetical protein
LOC_Os01g33770OsAffx.23495.2.S1_s_at11/111+18916513..18917154hypothetical protein
LOC_Os01g33770OsAffx.23495.2.S1_at11/111+18916513..18917154hypothetical protein
LOC_Os01g33784Os.17777.1.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.1.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33800Os.7307.2.S1_s_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_a_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.2.S1_x_at10/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800OsAffx.11306.1.S1_at1/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33810OsAffx.11305.1.S1_at11/111+18940590..18943406NB-ARC domain containing protein, expressed
LOC_Os01g33820OsAffx.23496.1.S1_at11/111+18944296..18944744hypothetical protein
LOC_Os01g33830OsAffx.2146.2.A1_at11/111+18947621..18948109hypothetical protein
LOC_Os01g33840Os.7307.2.S1_s_at11/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33840OsAffx.11306.1.S1_at9/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.17777.2.S1_at--784--5011Chr01:18924680..18924704 (25 bp)
GAAGCTACCGGTGTTAAGGATGTAG
LOC_Os01g33784
Os.17777.2.S1_at--532--2691Chr01:18924681..18924705 (25 bp)
AAGCTACCGGTGTTAAGGATGTAGA
LOC_Os01g33784
Os.17777.2.S1_at--1096--4831Chr01:18924683..18924707 (25 bp)
GCTACCGGTGTTAAGGATGTAGATT
LOC_Os01g33784
Os.17777.2.S1_at--170--4251Chr01:18924687..18924711 (25 bp)
CCGGTGTTAAGGATGTAGATTTTTG
LOC_Os01g33784
Os.17777.2.S1_at--77--8791Chr01:18924691..18924715 (25 bp)
TGTTAAGGATGTAGATTTTTGCACT
LOC_Os01g33784
Os.17777.2.S1_at--887--9771Chr01:18924694..18924718 (25 bp)
TAAGGATGTAGATTTTTGCACTTAA
LOC_Os01g33784
Os.17777.2.S1_at--318--9431Chr01:18924728..18924752 (25 bp)
TCGTGTGTTCGCGTTTTGTTTTTGC
LOC_Os01g33784
Os.17777.2.S1_at--785--7471Chr01:18924730..18924754 (25 bp)
GTGTGTTCGCGTTTTGTTTTTGCTC
LOC_Os01g33784
Os.17777.2.S1_at--672--8671Chr01:18924731..18924755 (25 bp)
TGTGTTCGCGTTTTGTTTTTGCTCT
LOC_Os01g33784
Os.17777.2.S1_at--1083--7411Chr01:18924732..18924756 (25 bp)
GTGTTCGCGTTTTGTTTTTGCTCTT
LOC_Os01g33784
Os.17777.2.S1_at--103--8811Chr01:18924733..18924757 (25 bp)
TGTTCGCGTTTTGTTTTTGCTCTTC
LOC_Os01g33784
Target Sequence
GAAGCTACCGGTGTTAAGGATGTAGATTTTTGCACTTAANNNNNNNNNTCGTGTGTTCGCGTTTTGTTTTTGCTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17777.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis