Browse Element(s) Details


OsAffx.23494.1.S1_at

Description tigr:9629.m03165
TID=OsAffx.23494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3376010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33720OsAffx.2145.1.S1_at11/111+18885871..18886444hypothetical protein
LOC_Os01g33730NANA1+18887292..18888959retrotransposon protein, putative, unclassified
LOC_Os01g33740NANA1+18892531..18898374retrotransposon protein, putative, unclassified
LOC_Os01g33750OsAffx.5284.1.S1_at1/111+18900988..18906693retrotransposon protein, putative, unclassified
LOC_Os01g33760OsAffx.23494.1.S1_at10/111+18908869..18910085hypothetical protein
LOC_Os01g33770OsAffx.23495.2.S1_s_at11/111+18916513..18917154hypothetical protein
LOC_Os01g33770OsAffx.23495.2.S1_at11/111+18916513..18917154hypothetical protein
LOC_Os01g33784Os.17777.1.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.1.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33800Os.7307.2.S1_s_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_a_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.2.S1_x_at10/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800OsAffx.11306.1.S1_at1/111+18927872..18938409DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23494.1.S1_at--416--7511Chr01:18908899..18908923 (25 bp)
GTGGTTTTTGTTAGCAGCCTTGCAT
LOC_Os01g33760
OsAffx.23494.1.S1_at--1123--10251Chr01:18908905..18908929 (25 bp)
TTTGTTAGCAGCCTTGCATCTCCTG
LOC_Os01g33760
OsAffx.23494.1.S1_at--911--9051Chr01:18908919..18908943 (25 bp)
TGCATCTCCTGCAGTAGCAAGAGAT
LOC_Os01g33760
OsAffx.23494.1.S1_at--1079--4271Chr01:18908926..18908950 (25 bp)
CCTGCAGTAGCAAGAGATGGACCTA
LOC_Os01g33760
OsAffx.23494.1.S1_at--617--1351Chr01:18908938..18908962 (25 bp)
AGAGATGGACCTACGATCAACCCAA
LOC_Os01g33760
OsAffx.23494.1.S1_at--58--5851Chr01:18908945..18908969 (25 bp)
GACCTACGATCAACCCAACGATGGG
LOC_Os01g33760
OsAffx.23494.1.S1_at--635--7576Chr12:3354081..3354105 (25 bp)
GGGCGGGCCCACTATTGATTCAAGG
NONE
OsAffx.23494.1.S1_at--244--4676Chr12:3354083..3354105 (23 bp)
GCGGGCCCACTATTGATTCAAGGAG
NONE
OsAffx.23494.1.S1_at--456--10776Chr12:3354095..3354565 (25 bp)
TTGATTCAAGGAGGCTTCCGGCTGC
NONE
OsAffx.23494.1.S1_at--256--3495Chr05:10892568..10892903 (25 bp)
CAGGCCACCACACAGGAATTTAGAG
NONE
OsAffx.23494.1.S1_at--871--4411Chr06:2879255..2879650 (25 bp)
GCCACCACACAGGAATTTAGAGAAT
NONE
Target Sequence 
GTGGTTTTTGTTAGCAGCCTTGCATCTCCTGCAGTAGCAAGAGATGGACCTACGATCAACCCAACGATGGGTACCAGGGG
CGGGCCCACTATTGATTCAAGGAGGCTTCCGGCTGCGGCGTGCGCGGCTGCGTCGGCGGCAGGAGGCGCCGAGGCGTGCA
GGCGGCGCGTCGACGGCTGCGGCCGTGCGGCGTTGGGGCTCGGCCAGGCGTGCAGGCCGCCAGTCCACCAGGCCACCACA
CAGGAATTTAGAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis