Browse Element(s) Details


OsAffx.2145.1.S1_at

Description tigr:9629.m03161
TID=OsAffx.2145.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3372011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33684Os.32933.1.S1_at11/111+18858748..18867654NB-ARC domain containing protein, expressed
LOC_Os01g33684Os.32933.2.S1_x_at11/111+18858748..18867654NB-ARC domain containing protein, expressed
LOC_Os01g33700Os.40360.1.S1_x_at1/111+18875724..18881551hypothetical protein
LOC_Os01g33710Os.54194.1.S1_at11/111+18882549..18883659expressed protein
LOC_Os01g33720OsAffx.2145.1.S1_at11/111+18885871..18886444hypothetical protein
LOC_Os01g33730NANA1+18887292..18888959retrotransposon protein, putative, unclassified
LOC_Os01g33740NANA1+18892531..18898374retrotransposon protein, putative, unclassified
LOC_Os01g33750OsAffx.5284.1.S1_at1/111+18900988..18906693retrotransposon protein, putative, unclassified
LOC_Os01g33760OsAffx.23494.1.S1_at10/111+18908869..18910085hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2145.1.S1_at--496--5311Chr01:18885901..18885925 (25 bp)
GAAGTTCATATTTTGGCAATTAACC
LOC_Os01g33720
OsAffx.2145.1.S1_at--532--10231Chr01:18885912..18885936 (25 bp)
TTTGGCAATTAACCATATTTTGACT
LOC_Os01g33720
OsAffx.2145.1.S1_at--364--8211Chr01:18885915..18885939 (25 bp)
GGCAATTAACCATATTTTGACTAAA
LOC_Os01g33720
OsAffx.2145.1.S1_at--655--9791Chr01:18885921..18885945 (25 bp)
TAACCATATTTTGACTAAACAGACA
LOC_Os01g33720
OsAffx.2145.1.S1_at--934--8891Chr01:18885932..18885956 (25 bp)
TGACTAAACAGACAATTGACAAGAA
LOC_Os01g33720
OsAffx.2145.1.S1_at--934--2131Chr01:18885939..18885963 (25 bp)
ACAGACAATTGACAAGAAGATCGGT
LOC_Os01g33720
OsAffx.2145.1.S1_at--741--2791Chr01:18885955..18885979 (25 bp)
AAGATCGGTGAGTTTTCTAACTGCC
LOC_Os01g33720
OsAffx.2145.1.S1_at--593--6391Chr01:18885957..18885981 (25 bp)
GATCGGTGAGTTTTCTAACTGCCAT
LOC_Os01g33720
OsAffx.2145.1.S1_at--303--9431Chr01:18885959..18885983 (25 bp)
TCGGTGAGTTTTCTAACTGCCATAT
LOC_Os01g33720
OsAffx.2145.1.S1_at--1106--7751Chr01:18885961..18885985 (25 bp)
GGTGAGTTTTCTAACTGCCATATTG
LOC_Os01g33720
OsAffx.2145.1.S1_at--1082--8891Chr01:18885963..18885987 (25 bp)
TGAGTTTTCTAACTGCCATATTGTT
LOC_Os01g33720
Target Sequence 
GAAGTTCATATTTTGGCAATTAACCATATTTTGACTAAACAGACAATTGACAAGAAGATCGGTGAGTTTTCTAACTGCCA
TATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2145.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis