Browse Element(s) Details


OsAffx.11306.1.S1_at

Description tigr:9629.m03173
TID=OsAffx.11306.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Z29879 come from this gene.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g338409/11DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g338001/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33784Os.17777.1.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.1.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33800Os.7307.2.S1_s_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_a_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.2.S1_x_at10/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800OsAffx.11306.1.S1_at1/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33810OsAffx.11305.1.S1_at11/111+18940590..18943406NB-ARC domain containing protein, expressed
LOC_Os01g33820OsAffx.23496.1.S1_at11/111+18944296..18944744hypothetical protein
LOC_Os01g33830OsAffx.2146.2.A1_at11/111+18947621..18948109hypothetical protein
LOC_Os01g33840Os.7307.2.S1_s_at11/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33840OsAffx.11306.1.S1_at9/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33869OsAffx.23497.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869Os.50839.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.2147.1.A1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_x_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8937.1.S1_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_at5/111+18952967..18968608expressed protein
LOC_Os01g33869Os.27440.1.S1_at4/111+18952967..18968608expressed protein
LOC_Os01g33869Os.17937.3.S1_at1/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.25952.1.S1_s_at1/111+18952967..18968608expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11306.1.S1_at--140--6292Chr01:18949107..18949131 (25 bp)
GATGATTCATTGTTCATGGGAGGAG
LOC_Os01g33840
OsAffx.11306.1.S1_at--600--6251Chr01:18949133..18949156 (24 bp)
GATGGGTGACCAGGCTTTTCTAAAC
LOC_Os01g33840
OsAffx.11306.1.S1_at--797--8611NONE
TGGGTGACCAGGCTTTTCTAAACTA
NONE
OsAffx.11306.1.S1_at--976--7651Chr01:18949137..18949383 (25 bp)
GGTGACCAGGCTTTTCTAAACTACT
LOC_Os01g33840
OsAffx.11306.1.S1_at--812--2531NONE
AACTACTTAATTAGAAGCCTATACA
NONE
OsAffx.11306.1.S1_at--628--9731Chr01:18950498..18950522 (25 bp)
TAATTAGAAGCCTATACAACAAAGC
LOC_Os01g33840
OsAffx.11306.1.S1_at--949--4331Chr01:18950707..18950731 (25 bp)
CCATGGAAGCCTTGTGACCGCGAGA
LOC_Os01g33840
OsAffx.11306.1.S1_at--655--3491Chr01:18950708..18950732 (25 bp)
CATGGAAGCCTTGTGACCGCGAGAA
LOC_Os01g33840
OsAffx.11306.1.S1_at--1113--3191Chr01:18950785..18950809 (25 bp)
CAAGGATTGTCATCCCGTTTTTCCT
LOC_Os01g33840
OsAffx.11306.1.S1_at--250--31Chr01:18950790..18950814 (25 bp)
ATTGTCATCCCGTTTTTCCTCTGGA
LOC_Os01g33840
OsAffx.11306.1.S1_at--1080--3351Chr01:18950795..18950819 (25 bp)
CATCCCGTTTTTCCTCTGGAGCTGT
LOC_Os01g33840
Target Sequence 
GATGATTCATTGTTCATGGGAGGAGAGATGGGTGACCAGGCTTTTCTAAACTACTTAATTAGAAGCCTATACAACAAAGC
AAAGGAAATTGCAGATGCAGATGATGAAAAGAGTAAAACCTCAGACGCTTCATTGGTGGATAAATACAATTCCTCCAAAC
GATCAGTATCTCTCGTGCAAAAGCATAAAGAGAGCAAAAAGGAAAAAAAGAAAAGAAGCAGAAGCAACGAGAGAAAGAAG
AAAGGGAAGGGAACCATCAACCACCCATGGAAGCCTTGTGACCGCGAGAAGGACCTGACTGCTGGGCGGCAAAATGTCAA
TTTAGATCCTGAGAACATGGCACAAGGATTGTCATCCCGTTTTTCCTCTGGAGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis