Browse Element(s) Details


OsAffx.8938.1.S1_x_at

Description gb:NM_193665.1
DB_XREF= gi:34914413
GEN=P0516D04.6
TID=OsAffx.8938.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0516D04.6 (P0516D04.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g338699/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33800Os.7307.2.S1_s_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_a_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.2.S1_x_at10/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800OsAffx.11306.1.S1_at1/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33810OsAffx.11305.1.S1_at11/111+18940590..18943406NB-ARC domain containing protein, expressed
LOC_Os01g33820OsAffx.23496.1.S1_at11/111+18944296..18944744hypothetical protein
LOC_Os01g33830OsAffx.2146.2.A1_at11/111+18947621..18948109hypothetical protein
LOC_Os01g33840Os.7307.2.S1_s_at11/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33840OsAffx.11306.1.S1_at9/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33869OsAffx.23497.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869Os.50839.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.2147.1.A1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_x_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8937.1.S1_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_at5/111+18952967..18968608expressed protein
LOC_Os01g33869Os.27440.1.S1_at4/111+18952967..18968608expressed protein
LOC_Os01g33869Os.17937.3.S1_at1/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.25952.1.S1_s_at1/111+18952967..18968608expressed protein
LOC_Os01g33900NANA1+18976867..18977097hypothetical protein
LOC_Os01g33910OsAffx.11307.1.S1_at11/111+18979073..18979777hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_x_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33930OsAffx.23500.1.S1_at11/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.23500.1.S1_x_at11/111+18985940..18992315expressed protein
LOC_Os01g33930Os.26912.1.A1_x_at7/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.14629.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33930Os.10728.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33940OsAffx.21174.2.S1_x_at8/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.1.S1_at5/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.2.S1_at4/111+18993085..18994720hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8938.1.S1_x_at--399--5391Chr01:18953060..18953084 (25 bp)
GAAGCAGCTGGGATTGAGAACGGAG
LOC_Os01g33869
OsAffx.8938.1.S1_x_at--453--6191Chr01:18953085..18953109 (25 bp)
GAGGCAAGGACCAGCTGCCAGAAGA
LOC_Os01g33869
OsAffx.8938.1.S1_x_at--836--5171Chr01:18953088..18953112 (25 bp)
GCAAGGACCAGCTGCCAGAAGATAC
LOC_Os01g33869
OsAffx.8938.1.S1_x_at--989--1691Chr01:18953094..18953114 (21 bp)
ACCAGCTGCCAGAAGATACAACATG
LOC_Os01g33869
OsAffx.8938.1.S1_x_at--551--2811NONE
AAGATACAACATGTGTGGCGGCGGC
NONE
OsAffx.8938.1.S1_x_at--853--331NONE
ATACAACATGTGTGGCGGCGGCGGG
NONE
OsAffx.8938.1.S1_x_at--341--4291Chr01:18954892..18954916 (25 bp)
CCTCCATGAGCAACAGCAGCGTCGC
LOC_Os01g33869
OsAffx.8938.1.S1_x_at--356--5011Chr01:18954907..18954931 (25 bp)
GCAGCGTCGCCCTCCTTAATATGGG
LOC_Os01g33869
OsAffx.8938.1.S1_x_at--457--1631Chr01:18954909..18954933 (25 bp)
AGCGTCGCCCTCCTTAATATGGGTG
LOC_Os01g33869
OsAffx.8938.1.S1_x_at--274--4651Chr01:18954910..18954934 (25 bp)
GCGTCGCCCTCCTTAATATGGGTGG
LOC_Os01g33869
OsAffx.8938.1.S1_x_at--324--4011Chr01:18954911..18954935 (25 bp)
CGTCGCCCTCCTTAATATGGGTGGC
LOC_Os01g33869
Target Sequence 
GAAGCAGCTGGGATTGAGAACGGAGGAGGCAAGGACCAGCTGCCAGAAGATACAACATGTGTGGCGGCGGCGGGGGCGGC
GCCCTTCCCCTCCATGAGCAACAGCAGCGTCGCCCTCCTTAATATGGGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8938.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis