Browse Element(s) Details


Os.27440.1.S1_at

Description gb:CB672745
DB_XREF= gi:29676470
DB_XREF=OSJNEe06P02.r
CLONE=OSJNEe06P02
TID=Os.27440.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.27440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0516D04.9 (P0516D04.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g338694/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33800Os.7307.2.S1_s_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_a_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.2.S1_x_at10/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800OsAffx.11306.1.S1_at1/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33810OsAffx.11305.1.S1_at11/111+18940590..18943406NB-ARC domain containing protein, expressed
LOC_Os01g33820OsAffx.23496.1.S1_at11/111+18944296..18944744hypothetical protein
LOC_Os01g33830OsAffx.2146.2.A1_at11/111+18947621..18948109hypothetical protein
LOC_Os01g33840Os.7307.2.S1_s_at11/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33840OsAffx.11306.1.S1_at9/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33869OsAffx.23497.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869Os.50839.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.2147.1.A1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_x_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8937.1.S1_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_at5/111+18952967..18968608expressed protein
LOC_Os01g33869Os.27440.1.S1_at4/111+18952967..18968608expressed protein
LOC_Os01g33869Os.17937.3.S1_at1/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.25952.1.S1_s_at1/111+18952967..18968608expressed protein
LOC_Os01g33900NANA1+18976867..18977097hypothetical protein
LOC_Os01g33910OsAffx.11307.1.S1_at11/111+18979073..18979777hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_x_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33930OsAffx.23500.1.S1_at11/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.23500.1.S1_x_at11/111+18985940..18992315expressed protein
LOC_Os01g33930Os.26912.1.A1_x_at7/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.14629.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33930Os.10728.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33940OsAffx.21174.2.S1_x_at8/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.1.S1_at5/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.2.S1_at4/111+18993085..18994720hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27440.1.S1_at--715--10351Chr01:18968230..18968254 (25 bp)
TTTATTGGCCTCAGCTCACAGATTT
LOC_Os01g33869
Os.27440.1.S1_at--542--3332Chr05:24720759..24721114 (25 bp)
CACTCCTTGCAAGCCATTGATTTTG
NONE
Os.27440.1.S1_at--419--1411Chr01:18968484..18968508 (25 bp)
AGACAGCAACTGAGCTCGAGAGCTT
LOC_Os01g33869
Os.27440.1.S1_at--639--4071NONE
CGAGAGCTTCGAGCTATTTTGCAGT
NONE
Os.27440.1.S1_at--471--6611Chr01:12072316..12072335 (20 bp)
GTTGGCAAGCATGATGAGCCCATTT
NONE
Os.27440.1.S1_at--582--10711NONE
TTGCTGTCAGATTTACTTTGGCGCT
NONE
Os.27440.1.S1_at--420--3691Chr01:18968577..18968601 (25 bp)
CTTTGGCGCTGCTTGCAGGAGATTC
LOC_Os01g33869
Os.27440.1.S1_at--503--6491NONE
GATACCATTGATTTCTGCGTTTGAA
NONE
Os.27440.1.S1_at--436--6891NONE
GTATATGCTGTTTGCTGCTACGTTT
NONE
Os.27440.1.S1_at--81--9931NONE
TACGTTTCGACTTCCTTACTGGTAG
NONE
Os.27440.1.S1_at--716--5011Chr01:18968693..18968717 (25 bp)
GCAGGACCAATTTGCCGTATGTCAA
NONE
Target Sequence 
TTTATTGGCCTCAGCTCACAGATTTGCCACTCCTTGCAAGCCATTGATTTTGATAAGGCTNTACAGAGTGCCANCCTTAC
AATGGATACGTATGCTCAAGATGGTANTGAGNGTGTGCAAATNTCCTACCNCCGATTTCCCGGGGATAAGAAGAGTAACN
CTCAGTCAGATGAAATGGNTGATAAAAAATAACGAAGATTACGTTGGGGTGTTCAAGAGGTATGAAATGGACAAGGCGCT
GAAGGAAGTGGCAGAGACAGCAACTGAGCTCGAGAGCTTCGAGCTATTTTGCAGTGGTTTTGGTGTTGGCAAGCATGATG
AGCCCATTTTTTTTGCTGTCAGATTTACTTTGGCGCTGCTTGCAGGAGATTCAGCATAATGATACCATTGATTTCTGCGT
TTGAAGGTATCAAGGATCAAGGTATATGCTGTTTGCTGCTACGTTTCGACTTCCTTACTGGTAGCAGGACCAATTTGCCG
TATGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis