Browse Element(s) Details


OsAffx.11305.1.S1_at

Description tigr:9629.m03170
TID=OsAffx.11305.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3381011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33770OsAffx.23495.2.S1_s_at11/111+18916513..18917154hypothetical protein
LOC_Os01g33770OsAffx.23495.2.S1_at11/111+18916513..18917154hypothetical protein
LOC_Os01g33784Os.17777.1.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.1.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33800Os.7307.2.S1_s_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_a_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.2.S1_x_at10/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800OsAffx.11306.1.S1_at1/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33810OsAffx.11305.1.S1_at11/111+18940590..18943406NB-ARC domain containing protein, expressed
LOC_Os01g33820OsAffx.23496.1.S1_at11/111+18944296..18944744hypothetical protein
LOC_Os01g33830OsAffx.2146.2.A1_at11/111+18947621..18948109hypothetical protein
LOC_Os01g33840Os.7307.2.S1_s_at11/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33840OsAffx.11306.1.S1_at9/111+18949077..18950853DNAJ heat shock N-terminal domain-containing protein, putative
LOC_Os01g33869OsAffx.23497.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869Os.50839.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.2147.1.A1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_x_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8937.1.S1_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_at5/111+18952967..18968608expressed protein
LOC_Os01g33869Os.27440.1.S1_at4/111+18952967..18968608expressed protein
LOC_Os01g33869Os.17937.3.S1_at1/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.25952.1.S1_s_at1/111+18952967..18968608expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11305.1.S1_at--181--6851Chr01:18942817..18942841 (25 bp)
GTTTGTCCTACCTAAGTATCACGGC
LOC_Os01g33810
OsAffx.11305.1.S1_at--1137--7511Chr01:18942916..18942940 (25 bp)
GTGGACGATTGGCACACACCATGTT
LOC_Os01g33810
OsAffx.11305.1.S1_at--524--1731Chr01:18942933..18942957 (25 bp)
ACCATGTTGGGTGCAGAGTCTCCTC
LOC_Os01g33810
OsAffx.11305.1.S1_at--1039--6091Chr01:18942948..18942972 (25 bp)
GAGTCTCCTCTATTCCAAGAAGATG
LOC_Os01g33810
OsAffx.11305.1.S1_at--476--5591Chr01:18942982..18943006 (25 bp)
GAAATCTGTACTCGTTGCGCCTATT
LOC_Os01g33810
OsAffx.11305.1.S1_at--1005--9151Chr01:18942997..18943021 (25 bp)
TGCGCCTATTTTGGTCCCAACTAAA
LOC_Os01g33810
OsAffx.11305.1.S1_at--657--4391Chr01:18943034..18943058 (25 bp)
GCCATCCCTTTCTCGGTTGTTAAAT
LOC_Os01g33810
OsAffx.11305.1.S1_at--393--2691Chr01:18943098..18943122 (25 bp)
AAGCTGGTCTTCCTTACTAGATGGT
LOC_Os01g33810
OsAffx.11305.1.S1_at--772--2771Chr01:18943240..18943264 (25 bp)
AAGAGGTCCCTCTAGGCATTGAGTT
LOC_Os01g33810
OsAffx.11305.1.S1_at--1118--591Chr01:18943269..18943293 (25 bp)
ATGCCCCTCAAATATCTAAGCTTCG
LOC_Os01g33810
OsAffx.11305.1.S1_at--615--5691Chr01:18943308..18943332 (25 bp)
GACTTCTTACTGTCATTGCGCCAAT
LOC_Os01g33810
Target Sequence 
GTTTGTCCTACCTAAGTATCACGGCAAGTGATGAGGATGATGTTCTCCAGTTGGATGGCTTGAACCCCCTTCCTCCAAGC
CTTCATAAACTACGTTTAAGTGGACGATTGGCACACACCATGTTGGGTGCAGAGTCTCCTCTATTCCAAGAAGATGCCGG
GGGACGAAATCTGTACTCGTTGCGCCTATTTTGGTCCCAACTAAAAGAGGATCCCTTGCCATCCCTTTCTCGGTTGTTAA
ATCTAACAGAGCTACATTTCACCAGAGCCTACAACGGAGAGAAGCTGGTCTTCCTTACTAGATGGTTTCCCAAGCTGAAG
GTTCTACGTTTAAGAGACTTGCCTAATCTAAAGAGGATGGATATTCAGCAAGGTGCCATGGTGAGCCTTGAAAGATTAAG
ACTAATAAACCTAAGCAGCATGGAAGAGGTCCCTCTAGGCATTGAGTTTCTCATGCCCCTCAAATATCTAAGCTTCGAGG
AGATCACTGTTGACTTCTTACTGTCATTGCGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis