Browse Element(s) Details


OsAffx.31898.1.S1_at

Description tigr:9640.m02586
TID=OsAffx.31898.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2693011/11hypothetical protein
LOC_Os01g339601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g290901/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26860Os.45173.5.S1_x_at4/1112+15734902..15745682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26860Os.47999.2.A1_x_at2/1112+15734902..15745682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26860Os.45173.1.S1_x_at1/1112+15734902..15745682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26860Os.47999.3.A1_x_at1/1112+15734902..15745682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26870Os.45173.5.S1_x_at4/1112+15746214..15748981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26880OsAffx.19841.1.S1_at10/1112+15755972..15757777Plastocyanin-like domain containing protein, expressed
LOC_Os12g26890OsAffx.19842.1.S1_at11/1112+15760792..15761951hypothetical protein
LOC_Os12g26890OsAffx.18924.2.S1_x_at6/1112+15760792..15761951hypothetical protein
LOC_Os12g26900NANA12+15763121..15764797retrotransposon protein, putative, unclassified
LOC_Os12g26910NANA12+15766239..15766841hypothetical protein
LOC_Os12g26920NANA12+15767690..15769491retrotransposon protein, putative, LINE subclass
LOC_Os12g26930OsAffx.31898.1.S1_at11/1112+15769967..15770413hypothetical protein
LOC_Os12g26940Os.12675.1.S1_at11/1112+15773759..15777216CHASE domain containing protein, expressed
LOC_Os12g26950NANA12+15778274..15780607transposon protein, putative, unclassified
LOC_Os12g26960Os.57289.1.S1_at11/1112+15785858..15786437expressed protein
LOC_Os12g26970OsAffx.13740.1.S1_at1/1112+15789003..15795490transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31898.1.S1_at--322--5611Chr12:15770356..15770380 (25 bp)
GACAAGGTCAGGGAAACTCAAGCTG
LOC_Os12g26930
OsAffx.31898.1.S1_at--149--9651Chr12:15770349..15770373 (25 bp)
TCAGGGAAACTCAAGCTGTCGTCAA
LOC_Os12g26930
OsAffx.31898.1.S1_at--1087--4711Chr12:15770335..15770359 (25 bp)
GCTGTCGTCAAGGAAGATATTTGCA
LOC_Os12g26930
OsAffx.31898.1.S1_at--959--5651Chr12:15770263..15770287 (25 bp)
GACAGTGGATCATATCACTCGCCGA
LOC_Os12g26930
OsAffx.31898.1.S1_at--175--2131Chr12:15770262..15770286 (25 bp)
ACAGTGGATCATATCACTCGCCGAG
LOC_Os12g26930
OsAffx.31898.1.S1_at--993--3191Chr12:15770192..15770216 (25 bp)
CAATGAAGTTGACTCGGACTACAAT
LOC_Os12g26930
OsAffx.31898.1.S1_at--169--5331Chr12:15770188..15770212 (25 bp)
GAAGTTGACTCGGACTACAATCCCC
LOC_Os12g26930
OsAffx.31898.1.S1_at--700--5251Chr12:15770063..15770087 (25 bp)
GAATGCTCCAAAAGGAAAGTCCAAG
LOC_Os12g26930
OsAffx.31898.1.S1_at--564--8911Chr12:15770060..15770084 (25 bp)
TGCTCCAAAAGGAAAGTCCAAGCCG
LOC_Os12g26930
OsAffx.31898.1.S1_at--157--2674Chr12:15770041..15770065 (25 bp)
AAGCCGCAACCGAAGCTGAAGCTAC
LOC_Os12g26930
OsAffx.31898.1.S1_at--407--4251Chr12:15770011..15770035 (25 bp)
CCGTGCGCACCACAGCTTCAAGCAA
LOC_Os12g26930
Target Sequence 
GACAAGGTCAGGGAAACTCAAGCTGTCGTCAAGGAAGATATTTGCACGCAAGTAGTCGCGGAGGAATCTTCGTCGTCTAG
CTCAAGTGAACCAGACAGTGGATCATATCACTCGCCGAGTGACCCCCATCCTTCTCCTGCAAAGACGAGAAAAGGCGGTA
GCGACAATGAAGTTGACTCGGACTACAATCCCCCCGAACCGGTGAAGAATGCTCCAAAAGGAAAGTCCAAGCCGCAACCG
AAGCTGAAGCTACAGCTGCCGTGCGCACCACAGCTTCAAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis