Browse Element(s) Details


Os.57289.1.S1_at

Description gb:AK111239.1
DB_XREF= gi:32996448
TID=Os.57289.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57289 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-C10, full insert sequence.
FL= gb:AK111239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2696011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26890OsAffx.19842.1.S1_at11/1112+15760792..15761951hypothetical protein
LOC_Os12g26890OsAffx.18924.2.S1_x_at6/1112+15760792..15761951hypothetical protein
LOC_Os12g26900NANA12+15763121..15764797retrotransposon protein, putative, unclassified
LOC_Os12g26910NANA12+15766239..15766841hypothetical protein
LOC_Os12g26920NANA12+15767690..15769491retrotransposon protein, putative, LINE subclass
LOC_Os12g26930OsAffx.31898.1.S1_at11/1112+15769967..15770413hypothetical protein
LOC_Os12g26940Os.12675.1.S1_at11/1112+15773759..15777216CHASE domain containing protein, expressed
LOC_Os12g26950NANA12+15778274..15780607transposon protein, putative, unclassified
LOC_Os12g26960Os.57289.1.S1_at11/1112+15785858..15786437expressed protein
LOC_Os12g26970OsAffx.13740.1.S1_at1/1112+15789003..15795490transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g26980Os.14491.2.S1_x_at1/1112+15798268..15802367transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g26990OsAffx.16467.1.S1_at9/1112+15807415..15808508hypothetical protein
LOC_Os12g26990Os.26886.2.S1_s_at8/1112+15807415..15808508hypothetical protein
LOC_Os12g26990Os.26886.6.S1_s_at6/1112+15807415..15808508hypothetical protein
LOC_Os12g27000NANA12+15809407..15810531transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57289.1.S1_at--344--10131Chr12:15785918..15785942 (25 bp)
TATGATGGTGGCCTCCCCTGTGAAG
LOC_Os12g26960
Os.57289.1.S1_at--1038--7191Chr12:15785967..15785991 (25 bp)
GTCGTGCTGGTCGTGCTGTCTTCTT
LOC_Os12g26960
Os.57289.1.S1_at--759--3411Chr12:15786023..15786047 (25 bp)
CAGCAAGTGTGACCAGTACTGCAAC
LOC_Os12g26960
Os.57289.1.S1_at--935--5891Chr12:15786116..15786140 (25 bp)
GAGCTGCAAGCAGGCCTACTACTAC
LOC_Os12g26960
Os.57289.1.S1_at--438--2531Chr12:15786177..15786201 (25 bp)
AACTGCGTCAACAGCTGAACCAAAT
LOC_Os12g26960
Os.57289.1.S1_at--550--1551Chr12:15786232..15786256 (25 bp)
AGCTTGTTGCTATGGCTCCATGTAG
LOC_Os12g26960
Os.57289.1.S1_at--818--2671Chr12:15786263..15786287 (25 bp)
AAGCGAATGCTAGCTGCATGCGCGC
LOC_Os12g26960
Os.57289.1.S1_at--815--10091Chr12:15786299..15786323 (25 bp)
TATGGTGGATGTATGCCCCTACTAT
LOC_Os12g26960
Os.57289.1.S1_at--1062--591Chr12:15786311..15786335 (25 bp)
ATGCCCCTACTATGTACAACTTCAT
LOC_Os12g26960
Os.57289.1.S1_at--159--7151Chr12:15786359..15786383 (25 bp)
GTCTTCTGTCGAAAAATGTTCCGTC
LOC_Os12g26960
Os.57289.1.S1_at--853--6831Chr12:15786384..15786408 (25 bp)
GTTTCTTGTACGTAACTCGGTCAAT
LOC_Os12g26960
Target Sequence 
TATGATGGTGGCCTCCCCTGTGAAGGTGGCCGTCGTCGCCGCCGTGTGCGTCGTGCTGGTCGTGCTGTCTTCTTCCCCGG
CGNCGGCGGCGGCGCAGATGATCTGCAGCAAGTGTGACCAGTACTGCAACTCGTCGTGCGCCGGTGGGATGGGTGGCTGC
AGCGGCGCCTGCACTGACCCAGCGTCCTCCTCATGCACGAGCTGCAAGCAGGCCTACTACTACAAGTGCATGAACTACTG
CGGCTCCTACTGCCGCTCCAACTGCGTCAACAGCTGAACCAAATATTATATGCGAATTCTCCCCCTGAATTAGAAGCTTG
TTGCTATGGCTCCATGTAGATAAATAAGCGAATGCTAGCTGCATGCGCGCTTGTGCTTGCATATGGTGGATGTATGCCCC
TACTATGTACAACTTCATATNATATATGTGAAANNTGCATGTGTCTTCTGTCGAAAAATGTTCCGTCGTTTCTTGTACGT
AACTCGGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis