Browse Element(s) Details


OsAffx.23501.1.S1_x_at

Description gb:NM_193678.1
DB_XREF= gi:34914439
GEN=P0516D04.20
TID=OsAffx.23501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative protein kinase Xa21 (P0516D04.20), mRNA.
PROD=putative protein kinase Xa21
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3395011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33900NANA1+18976867..18977097hypothetical protein
LOC_Os01g33910OsAffx.11307.1.S1_at11/111+18979073..18979777hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_x_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33930OsAffx.23500.1.S1_at11/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.23500.1.S1_x_at11/111+18985940..18992315expressed protein
LOC_Os01g33930Os.26912.1.A1_x_at7/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.14629.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33930Os.10728.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33940OsAffx.21174.2.S1_x_at8/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.1.S1_at5/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.2.S1_at4/111+18993085..18994720hypothetical protein
LOC_Os01g33950OsAffx.23501.1.S1_x_at11/111+18998075..19002520Leucine Rich Repeat family protein, expressed
LOC_Os01g33950OsAffx.23501.2.S1_at9/111+18998075..19002520Leucine Rich Repeat family protein, expressed
LOC_Os01g33960OsAffx.32312.1.A1_at10/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.2.S1_x_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.2.S1_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.10837.1.S1_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.5.S1_x_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.1869.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19842.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19421.2.S1_at2/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.4.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.31898.1.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.32283.1.A1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.20497.1.S1_at3/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.21754.1.S1_x_at2/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.22387.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.3348.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.31287.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.9949.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23501.1.S1_x_at--879--9331Chr01:19000617..19000641 (25 bp)
TCGCTGTTGATGTTGCCGATGCAAT
LOC_Os01g33950
OsAffx.23501.1.S1_x_at--488--2491Chr01:19000658..19000682 (25 bp)
AACAGTTGCCCGACAGTGATTCATT
LOC_Os01g33950
OsAffx.23501.1.S1_x_at--326--2511Chr01:19000700..19000724 (25 bp)
AACATCCTCCTTAGTGCTGACTGGA
LOC_Os01g33950
OsAffx.23501.1.S1_x_at--793--5731Chr01:19000718..19000742 (25 bp)
GACTGGACTGCTTATGTTGCTGACT
LOC_Os01g33950
OsAffx.23501.1.S1_x_at--613--6351Chr01:19001005..19001029 (25 bp)
GATGCCTACAGCTTTGGGATTACTC
LOC_Os01g33950
OsAffx.23501.1.S1_x_at--511--7611Chr01:19001047..19001071 (25 bp)
GGGAAGGCCCCAACTGATAATATGT
LOC_Os01g33950
OsAffx.23501.1.S1_x_at--1150--10751Chr01:19001083..19001107 (25 bp)
TTGACCCTGCACTTACATGCTGAGA
LOC_Os01g33950
OsAffx.23501.1.S1_x_at--531--3531Chr01:19001098..19001122 (25 bp)
CATGCTGAGATGACCTTGCCTGAAA
LOC_Os01g33950
OsAffx.23501.1.S1_x_at--675--8931Chr01:19001139..19001163 (25 bp)
TGACCCAGCACTGTTGCACGTGGAA
LOC_Os01g33950
OsAffx.23501.1.S1_x_at--533--2851Chr01:19001213..19001237 (25 bp)
AAGTCGGTGTCTCATGTTCAAAGGA
LOC_Os01g33950
OsAffx.23501.1.S1_x_at--645--5511Chr01:19001262..19001286 (25 bp)
GAAACATGCTGCTGCTAAGCTGAAC
LOC_Os01g33950
Target Sequence 
TCGCTGTTGATGTTGCCGATGCAATAGACCATCTTCACAACAACAGTTGCCCGACAGTGATTCATTGTGATTTGAAGCCT
AGCAACATCCTCCTTAGTGCTGACTGGACTGCTTATGTTGCTGACTTTGGACTTGCAAAGCTGGTTGGCGAATCCATAGA
AAAATCTGGTTTGAGTGCTGGGGACAGCAGCACTGTTGGGATAAGAGGAACCATAGGATATGTTGCTCCAGAATATGGAG
CAGGTGGGCAAGCATCTGTTGTTGGTGATGCCTACAGCTTTGGGATTACTCTGCTTGAGATGTTCACAGGGAAGGCCCCA
ACTGATAATATGTTCAGAGAAGGCTTGACCCTGCACTTACATGCTGAGATGACCTTGCCTGAAAAAATATCAGAAATCAT
TGACCCAGCACTGTTGCACGTGGAACAGTATGACACCGATGCAGAGATACTAACTTGCTTATCTTCTGTAATAGAAGTCG
GTGTCTCATGTTCAAAGGAAAACCCATCAGAAAGAATGGACATGAAACATGCTGCTGCTAAGCTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23501.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis