Browse Element(s) Details


OsAffx.32312.1.A1_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=rps18
TID=OsAffx.32312.1
CNT=1
FEA=DNA_50
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein S18 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=ribosomal protein S18
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3396010/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33930OsAffx.23500.1.S1_at11/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.23500.1.S1_x_at11/111+18985940..18992315expressed protein
LOC_Os01g33930Os.26912.1.A1_x_at7/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.14629.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33930Os.10728.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33940OsAffx.21174.2.S1_x_at8/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.1.S1_at5/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.2.S1_at4/111+18993085..18994720hypothetical protein
LOC_Os01g33950OsAffx.23501.1.S1_x_at11/111+18998075..19002520Leucine Rich Repeat family protein, expressed
LOC_Os01g33950OsAffx.23501.2.S1_at9/111+18998075..19002520Leucine Rich Repeat family protein, expressed
LOC_Os01g33960OsAffx.32312.1.A1_at10/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.2.S1_x_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.2.S1_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.10837.1.S1_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.5.S1_x_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.1869.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19842.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19421.2.S1_at2/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.4.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.31898.1.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.32283.1.A1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.20497.1.S1_at3/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.21754.1.S1_x_at2/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.22387.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.3348.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.31287.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.9949.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33980NANA1+19029112..19029333hypothetical protein
LOC_Os01g33990OsAffx.23502.2.S1_at6/111+19030303..19033308transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34000OsAffx.21172.1.S1_at10/111+19037627..19038616hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32312.1.A1_at--588--9455Chr08:9270964..9270988 (25 bp)
TCTGGTTGGAGTTTCTTAAGTTTCG
NONE
OsAffx.32312.1.A1_at--646--9394Chr08:9270986..9271010 (25 bp)
TCGATTGGAATTGAACTTTTGTGTT
NONE
OsAffx.32312.1.A1_at--395--3115Chr08:9271019..9271043 (25 bp)
AATATGTCTATTTTTTCTGGGTCTA
NONE
OsAffx.32312.1.A1_at--1158--9535Chr08:9271025..9271049 (25 bp)
TCTATTTTTTCTGGGTCTAGGACCT
NONE
OsAffx.32312.1.A1_at--101--10695Chr08:9271063..9271087 (25 bp)
TTGACTGGGCTTGAAATTGTTTCTC
NONE
OsAffx.32312.1.A1_at--552--55Chr08:9271078..9271102 (25 bp)
ATTGTTTCTCATTCTCATAGTTACG
NONE
OsAffx.32312.1.A1_at--97--5876Chr08:9271126..9271150 (25 bp)
GAGCCTGTTTTATAGCAAGAGTAAT
NONE
OsAffx.32312.1.A1_at--545--6095Chr08:9271144..9271168 (25 bp)
GAGTAATTAATCGTTGTTGTTTCAA
NONE
OsAffx.32312.1.A1_at--505--1015Chr08:9271168..9271192 (25 bp)
AGGTTAATCTATTTATTCGTCTCGA
NONE
OsAffx.32312.1.A1_at--694--10394Chr08:9271199..9271223 (25 bp)
TTTTCCTTGTTCACTAATAAATCGA
NONE
OsAffx.32312.1.A1_at--1055--8756Chr08:9271237..9271261 (25 bp)
TGTTTCTATAATCAATTCGATCCCC
NONE
Target Sequence 
TCTGGTTGGAGTTTCTTAAGTTTCGATTGGAATTGAACTTTTGTGTTAATGGAGGAATATGTCTATTTTTTCTGGGTCTA
GGACCTGTAATTATTGAAATTGACTGGGCTTGAAATTGTTTCTCATTCTCATAGTTACGAAATGGTAAGAAAGATAAAAT
ACGAGCCTGTTTTATAGCAAGAGTAATTAATCGTTGTTGTTTCAAGGTTAATCTATTTATTCGTCTCGATAATATTTTTC
CTTGTTCACTAATAAATCGATTAATTAAACTCATGTTTCTATAATCAATTCGATCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32312.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis