Browse Element(s) Details

OsAffx.23502.2.S1_at

Description

gb:NM_193680.1
DB_XREF= gi:34914443
GEN=P0516D04.26
TID=OsAffx.23502.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0516D04.26 (P0516D04.26), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g33990	6/11	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g50050	5/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g33960	OsAffx.32312.1.A1_at	10/11	1	+	19010862..19020435	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960	OsAffx.18924.2.S1_x_at	5/11	1	+	19010862..19020435	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960	OsAffx.19953.2.S1_at	5/11	1	+	19010862..19020435	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960	OsAffx.10837.1.S1_at	4/11	1	+	19010862..19020435	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960	OsAffx.19953.5.S1_x_at	4/11	1	+	19010862..19020435	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960	OsAffx.1869.1.S1_at	3/11	1	+	19010862..19020435	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960	OsAffx.19842.1.S1_at	3/11	1	+	19010862..19020435	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960	OsAffx.19421.2.S1_at	2/11	1	+	19010862..19020435	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960	OsAffx.18924.4.S1_at	1/11	1	+	19010862..19020435	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960	OsAffx.31898.1.S1_at	1/11	1	+	19010862..19020435	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960	OsAffx.32283.1.A1_at	1/11	1	+	19010862..19020435	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970	OsAffx.20497.1.S1_at	3/11	1	+	19022177..19026338	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970	OsAffx.21754.1.S1_x_at	2/11	1	+	19022177..19026338	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970	OsAffx.22387.1.S1_at	1/11	1	+	19022177..19026338	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970	OsAffx.3348.1.S1_at	1/11	1	+	19022177..19026338	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970	OsAffx.31287.1.S1_at	1/11	1	+	19022177..19026338	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970	OsAffx.9949.1.S1_at	1/11	1	+	19022177..19026338	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33980	NA	NA	1	+	19029112..19029333	hypothetical protein
LOC_Os01g33990	OsAffx.23502.2.S1_at	6/11	1	+	19030303..19033308	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34000	OsAffx.21172.1.S1_at	10/11	1	+	19037627..19038616	hypothetical protein
LOC_Os01g34010	Os.36245.2.S1_at	10/11	1	+	19046792..19049950	expressed protein
LOC_Os01g34010	Os.52455.1.S1_at	1/11	1	+	19046792..19049950	expressed protein
LOC_Os01g34020	NA	NA	1	+	19054772..19054993	transposon protein, putative, unclassified
LOC_Os01g34030	OsAffx.22711.3.S1_x_at	1/11	1	+	19058064..19062002	retrotransposon protein, putative, unclassified
LOC_Os01g34030	OsAffx.20380.1.S1_x_at	1/11	1	+	19058064..19062002	retrotransposon protein, putative, unclassified
LOC_Os01g34030	OsAffx.22711.1.S1_x_at	1/11	1	+	19058064..19062002	retrotransposon protein, putative, unclassified
LOC_Os01g34030	OsAffx.20380.2.S1_at	1/11	1	+	19058064..19062002	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.23502.2.S1_at--749--449	3	Chr11:21276819..21276843 (25 bp)	GCCGTCTTCCGATGTGGATCTTGAC	NONE
OsAffx.23502.2.S1_at--1144--865	3	Chr11:21276831..21276855 (25 bp)	TGTGGATCTTGACCGGAAGAACTCC	NONE
OsAffx.23502.2.S1_at--274--861	3	Chr11:21276888..21276912 (25 bp)	TGGTGCCATCAACCACATCGGACTT	NONE
OsAffx.23502.2.S1_at--1004--1065	3	Chr11:21276911..21276935 (25 bp)	TTCCGTCGTTGCTGTCATCTATCAA	NONE
OsAffx.23502.2.S1_at--311--1017	1	NONE	TATCAATCACCTCGCCGGTTGCTAT	NONE
OsAffx.23502.2.S1_at--422--705	2	Chr11:21278509..21278533 (25 bp)	GTAACCCACCACGTAGTGCAGAGGA	NONE
OsAffx.23502.2.S1_at--83--99	5	Chr11:21278530..21278554 (25 bp)	AGGAGTACTTTAACATGAGGCATGC	NONE
OsAffx.23502.2.S1_at--546--403	3	Chr11:21278601..21278625 (25 bp)	CGTTGGGCGATTTTGAGGTCCCCAT	NONE
OsAffx.23502.2.S1_at--13--1025	3	Chr11:21278612..21278636 (25 bp)	TTTGAGGTCCCCATCATATTTTCCT	NONE
OsAffx.23502.2.S1_at--312--297	5	Chr11:21278660..21278684 (25 bp)	AATGGCATGTGCTTTATTGCACAAC	NONE
OsAffx.23502.2.S1_at--226--515	4	Chr11:21278693..21278717 (25 bp)	GCAAAAGATGTCTAGTGATCCATTT	NONE

Target Sequence

GCCGTCTTCCGATGTGGATCTTGACCGGAAGAACTCCGGGAACAAGGGCGAGGCTGTGAAGCAGGGGGCTGGTGCCATCA
ACCACATCGGACTTCCGTCGTTGCTGTCATCTATCAATCACCTCGCCGGTTGCTATTACCTTGTGGATGCTGGTTATACA
AACGCAGATGGTTTTTTAGCCCCTTACCGAGGCCAAAGATATCATTTAGGCCGTTTCACAGCACGTAACCCACCACGTAG
TGCAGAGGAGTACTTTAACATGAGGCATGCAAGTGCTAGAAATATTGTAGAGAGGTCTTTTGGAAGACTAAAGGGTCGTT
GGGCGATTTTGAGGTCCCCATCATATTTTCCTATCAAAACTCAGTGTCGAATTATAATGGCATGTGCTTTATTGCACAAC
TTAATTTTGCAAAAGATGTCTAGTGATCCATTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis