Browse Element(s) Details


Os.36245.2.S1_at

Description gb:NM_193683.1
DB_XREF= gi:34914449
GEN=OJ1005_B10.25
TID=Os.36245.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1005_B10.25 (OJ1005_B10.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1005_B10.25 (OJ1005_B10.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3401010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33970OsAffx.20497.1.S1_at3/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.21754.1.S1_x_at2/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.22387.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.3348.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.31287.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.9949.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33980NANA1+19029112..19029333hypothetical protein
LOC_Os01g33990OsAffx.23502.2.S1_at6/111+19030303..19033308transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34000OsAffx.21172.1.S1_at10/111+19037627..19038616hypothetical protein
LOC_Os01g34010Os.36245.2.S1_at10/111+19046792..19049950expressed protein
LOC_Os01g34010Os.52455.1.S1_at1/111+19046792..19049950expressed protein
LOC_Os01g34020NANA1+19054772..19054993transposon protein, putative, unclassified
LOC_Os01g34030OsAffx.22711.3.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.20380.1.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.22711.1.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.20380.2.S1_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.1.S1_at11/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.3.S1_x_at4/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.4.S1_x_at3/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.20729.1.S1_x_at2/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.4.S1_at1/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.5.S1_x_at1/111+19062537..19068571retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36245.2.S1_at--1072--2391Chr01:19049129..19049153 (25 bp)
AAACTTGTCGAGATGCTCTCTGCTG
LOC_Os01g34010
Os.36245.2.S1_at--377--3772Chr07:9823321..9823341 (21 bp)
CTCTGCTGACTCTACTGGGTTCAAA
NONE
Os.36245.2.S1_at--1097--5431Chr01:19049173..19049197 (25 bp)
GAACGTTGCAAAACTTTCGGGCATT
LOC_Os01g34010
Os.36245.2.S1_at--865--171Chr01:19049195..19049219 (25 bp)
ATTTTACACGCCAACTCCAGAGCAG
LOC_Os01g34010
Os.36245.2.S1_at--809--1971NONE
ACTGCACTACCAACGAATTTCCAAG
NONE
Os.36245.2.S1_at--1084--5011Chr01:19049560..19049584 (25 bp)
GCAGGGTGCACTACTAGAGAGCTTT
LOC_Os01g34010
Os.36245.2.S1_at--200--3691Chr01:19049581..19049605 (25 bp)
CTTTGTTGGGCTCAGTGTTCAGATC
LOC_Os01g34010
Os.36245.2.S1_at--281--7431Chr01:19049595..19049619 (25 bp)
GTGTTCAGATCTGCACATCCATTCA
LOC_Os01g34010
Os.36245.2.S1_at--17--5411Chr01:19049636..19049660 (25 bp)
GAAGCTCTCCGGAGTGCCAATGTTA
LOC_Os01g34010
Os.36245.2.S1_at--309--10171Chr01:19049703..19049727 (25 bp)
TATACAAGTCACCAGCCATCGAGTT
LOC_Os01g34010
Os.36245.2.S1_at--162--6711Chr01:19049725..19049749 (25 bp)
GTTCCCAGGGATAAGGCGAGTCGCA
LOC_Os01g34010
Target Sequence 
AAACTTGTCGAGATGCTCTCTGCTGACTCTACTGGGTTCAAAACGAACGTTGCAAAACTTTCGGGCATTTTACACGCCAA
CTCCAGAGCAGAGCATGCTCATCTTCAGAAGACAATAATCAACACTGCACTACCAACGAATTTCCAAGAATGGAGGACCA
AGCAGGGTGCACTACTAGAGAGCTTTGTTGGGCTCAGTGTTCAGATCTGCACATCCATTCACGCAAGCGATTTCAATGAA
GCTCTCCGGAGTGCCAATGTTACAGTGTACATGGTCATGCAGAAGCTTAGAAAGATCCTAGATTTATACAAGTCACCAGC
CATCGAGTTCCCAGGGATAAGGCGAGTCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36245.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis