Browse Element(s) Details


OsAffx.20380.2.S1_at

Description gb:NM_196323.1
DB_XREF= gi:37534005
TID=OsAffx.20380.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0011L09.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2554011/11retrotransposon protein, putative, unclassified
LOC_Os01g340301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25502OsAffx.21171.5.S1_x_at1/1110+12861331..12863178retrotransposon protein, putative, unclassified
LOC_Os10g25517OsAffx.21171.3.S1_x_at5/1110+12864973..12865386retrotransposon protein, putative, unclassified
LOC_Os10g25530NANA10+12868472..12875130retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25540OsAffx.20380.2.S1_at11/1110+12879394..12881298retrotransposon protein, putative, unclassified
LOC_Os10g25540OsAffx.20380.2.S1_x_at11/1110+12879394..12881298retrotransposon protein, putative, unclassified
LOC_Os10g25544NANA10+12883438..12884489hypothetical protein
LOC_Os10g25550Os.46687.1.S1_at11/1110+12888521..12894729serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g25550Os.46687.1.S1_x_at11/1110+12888521..12894729serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g25560Os.46686.1.S1_at11/1110+12899775..12906412myosin, putative, expressed
LOC_Os10g25560Os.40082.1.A1_x_at1/1110+12899775..12906412myosin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20380.2.S1_at--188--7691Chr10:12879896..12879920 (25 bp)
GGGTCTCAGGGTCGGAGCCTTCGTG
LOC_Os10g25540
OsAffx.20380.2.S1_at--32--5752Chr01:19060061..19060081 (21 bp)
GACGAAATCCGAACGATCGGAACGG
LOC_Os01g34030
OsAffx.20380.2.S1_at--189--7131Chr10:12879814..12879838 (25 bp)
GTCTTCGCAGCCTCGCAGTGGGACC
LOC_Os10g25540
OsAffx.20380.2.S1_at--794--1091Chr10:12879798..12879822 (25 bp)
AGTGGGACCCACAGGCCACATACCG
LOC_Os10g25540
OsAffx.20380.2.S1_at--870--1991Chr10:12879781..12879805 (25 bp)
ACATACCGGGCCTGGTCCCGAGCGA
LOC_Os10g25540
OsAffx.20380.2.S1_at--103--4251Chr10:12879749..12879773 (25 bp)
CCGGGACTCGACTTGCTGCGGGCAA
LOC_Os10g25540
OsAffx.20380.2.S1_at--1013--1951Chr10:12879744..12879768 (25 bp)
ACTCGACTTGCTGCGGGCAACGGTA
LOC_Os10g25540
OsAffx.20380.2.S1_at--154--1351Chr10:12879689..12879713 (25 bp)
AGACTAGGGTCCATGCGGAACGCCA
LOC_Os10g25540
OsAffx.20380.2.S1_at--663--1052Chr10:11448368..11448576 (25 bp)
AGGGAGGTCGCAGCTCGGGAGCCGA
NONE
OsAffx.20380.2.S1_at--709--871Chr10:12879623..12879647 (25 bp)
AGGCCGGAGGTGATCCTGAGCCCGA
LOC_Os10g25540
OsAffx.20380.2.S1_at--405--9651Chr10:12879491..12879515 (25 bp)
TCACCTTTGGGCTCGCCTCGGATGA
LOC_Os10g25540
Target Sequence 
GGGTCTCAGGGTCGGAGCCTTCGTGGGGGACGAAATCCGAACGATCGGAACGGTCCGGGCCCGGCCAATCCAAGGCCGCG
GGGTCTTCGCAGCCTCGCAGTGGGACCCACAGGCCACATACCGGGCCTGGTCCCGAGCGACCCTCAGCCGGGACTCGACT
TGCTGCGGGCAACGGTAGCGGCGACGTTCCTCCCGGGGGCGGCTGTGAGACTAGGGTCCATGCGGAACGCCACCCAGGAT
CGGGGGGTGAGGGAGGTCGCAGCTCGGGAGCCGAGGCCGGAGGTGATCCTGAGCCCGAGGTCGAAGTCAAGGCTGGGGGC
GGTCCCGAGTCCGAGGTCAAGGTCGAGGTTGGGGGCGGTCCTGAGCCCGAGGTCGAAGTCGAGGCTGCCCGGTTGGCCCC
CCAGTTCACCTTTGGGCTCGCCTCGGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20380.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis