Browse Element(s) Details


Os.57499.1.S1_x_at

Description gb:U04296.1
DB_XREF= gi:435943
TID=Os.57499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57499 (NCBI UniGene Cluster)
UG_TITLE=Nipponbare bZIP DNA-binding factor (osZIP-2a) mRNA, partial cds
DEF=Oryza sativa Nipponbare bZIP DNA-binding factor (osZIP-2a) mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0564011/11bZIP transcription factor family protein, expressed
LOC_Os12g060101/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05590OsAffx.7006.1.S1_at11/1111+2532826..2534187hypothetical protein
LOC_Os11g05600Os.53499.1.S1_at11/1111+2535682..2538894expressed protein
LOC_Os11g05614Os.54623.1.S2_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05614Os.54623.1.S1_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05630OsAffx.30829.2.S1_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05630OsAffx.30829.2.S1_x_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05640OsAffx.18691.1.S1_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed
LOC_Os11g05640Os.57499.1.S1_x_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed
LOC_Os11g05650OsAffx.30830.1.S1_at11/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05650Os.8763.1.S1_at11/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05650Os.51912.1.S1_at10/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05660Os.55611.1.S1_s_at11/1111+2564900..2566295F-box domain containing protein, expressed
LOC_Os11g05680OsAffx.20484.1.S1_x_at1/1111+2573598..2574206hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57499.1.S1_x_at--916--8191Chr11:2557163..2557187 (25 bp)
GGAAGGTCGGAATCCAGTCGTCGCC
LOC_Os11g05640
Os.57499.1.S1_x_at--728--8192Chr11:2557171..2557195 (25 bp)
GGAATCCAGTCGTCGCCGCCATGCT
LOC_Os11g05640
Os.57499.1.S1_x_at--508--4391Chr11:2557277..2557394 (25 bp)
GCCACATGCTCACCGAGGCCGAGAA
LOC_Os11g05640
Os.57499.1.S1_x_at--521--6112Chr12:2775368..2775392 (25 bp)
GAGTGCTCGCCAACCGGGAATCCGC
LOC_Os12g06010
Os.57499.1.S1_x_at--246--4531Chr11:2557185..2557590 (25 bp)
GCCGCCAGGCGATCCGAGATGAATT
LOC_Os11g05640
Os.57499.1.S1_x_at--1162--8331Chr11:2557573..2557597 (25 bp)
GGCGATCCGAGATGAATTGGCAAGA
LOC_Os11g05640
Os.57499.1.S1_x_at--875--1391Chr11:2557595..2557619 (25 bp)
AGAAAAGTTGCAGATTTGTCGTCGC
LOC_Os11g05640
Os.57499.1.S1_x_at--93--6671Chr11:2557601..2557625 (25 bp)
GTTGCAGATTTGTCGTCGCAGAACG
LOC_Os11g05640
Os.57499.1.S1_x_at--1149--8691Chr11:2557611..2557635 (25 bp)
TGTCGTCGCAGAACGAGACCATGAA
LOC_Os11g05640
Os.57499.1.S1_x_at--693--1911Chr11:2557808..2557832 (25 bp)
ACGTGGTGATGCAGGAGTATCTCTC
LOC_Os11g05640
Os.57499.1.S1_x_at--530--7391Chr11:2557813..2557837 (25 bp)
GTGATGCAGGAGTATCTCTCACTGA
LOC_Os11g05640
Target Sequence 
GGAAGGTCGGAATCCAGTCGTCGCCGCCATGCTCCAGCAGCTCAAGCGCCGGCCACCCCGCGATGCAGCCCGCCGCCGCG
GCCACGGCGGCGCCGGGCTACGGCCCCAGGCCACGCCACATGCTCACCGAGGCCGAGAAGGAGGCGAAGCGTCTCCGGCG
AGTGCTCGCCAACCGGGAATCCGCCCGGAAAACCATCCTCCGCCGCCAGGCGATCCGAGATGAATTGGCAAGAAAAGTTG
CAGATTTGTCGTCGCAGAACGAGACCATGAAAAAGGAGAAGGACGTGGTGATGCAGGAGTATCTCTCACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57499.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis