Browse Element(s) Details


Os.51912.1.S1_at

Description gb:AK064254.1
DB_XREF= gi:32974272
TID=Os.51912.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51912 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-C08, full insert sequence.
FL= gb:AK064254.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0565010/11mRNA decapping enzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05600Os.53499.1.S1_at11/1111+2535682..2538894expressed protein
LOC_Os11g05614Os.54623.1.S2_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05614Os.54623.1.S1_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05630OsAffx.30829.2.S1_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05630OsAffx.30829.2.S1_x_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05640OsAffx.18691.1.S1_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed
LOC_Os11g05640Os.57499.1.S1_x_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed
LOC_Os11g05650OsAffx.30830.1.S1_at11/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05650Os.8763.1.S1_at11/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05650Os.51912.1.S1_at10/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05660Os.55611.1.S1_s_at11/1111+2564900..2566295F-box domain containing protein, expressed
LOC_Os11g05680OsAffx.20484.1.S1_x_at1/1111+2573598..2574206hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51912.1.S1_at--804--10871Chr11:2562062..2562086 (25 bp)
TTGGAAGGTAATGCTCTCCCCATGG
LOC_Os11g05650
Os.51912.1.S1_at--1060--811Chr11:2562083..2562107 (25 bp)
ATGGTCCTGTTCTCATGGCATATTC
LOC_Os11g05650
Os.51912.1.S1_at--649--9631Chr11:2562095..2562119 (25 bp)
TCATGGCATATTCTGTTGTGGCTAT
LOC_Os11g05650
Os.51912.1.S1_at--262--451Chr11:2562163..2562187 (25 bp)
ATCTACTTGGTGTGTATGCCCGCAA
LOC_Os11g05650
Os.51912.1.S1_at--934--891Chr11:2562270..2562294 (25 bp)
AGGCTGGATCACATTCTGTCGACTT
LOC_Os11g05650
Os.51912.1.S1_at--917--9371NONE
TCGATGTTCTCTCCAAGGCAATCTA
NONE
Os.51912.1.S1_at--891--8211Chr11:2562380..2562404 (25 bp)
GGCAATCTACTAATTTTCCTGCGAT
LOC_Os11g05650
Os.51912.1.S1_at--247--7451Chr11:2562410..2562434 (25 bp)
GTGTGAAGGCTATTGGGTTCCATTC
LOC_Os11g05650
Os.51912.1.S1_at--547--7671Chr11:2562424..2562448 (25 bp)
GGGTTCCATTCTGTTGCTGTATACA
LOC_Os11g05650
Os.51912.1.S1_at--1016--5671Chr11:2562499..2562523 (25 bp)
GACATTTTGGGAGACACTGCTGCAT
LOC_Os11g05650
Os.51912.1.S1_at--293--10391Chr11:2562543..2562567 (25 bp)
TTTTCCTCCTTTTTGGCTGGCAATA
LOC_Os11g05650
Target Sequence 
TTGGAAGGTAATGCTCTCCCCATGGTCCTGTTCTCATGGCATATTCTGTTGTGGCTATGATGTATACAGGAATCACATAG
TACAAGGTAGTGAGATTGTTAATCTACTTGGTGTGTATGCCCGCAAAAAAGAAAAATCTAGTTAAGTAGTTAGTGTGTAG
ATTATAAACATGTAGGAGTGGATAACGTCAACAAACGAGATTGATAGCAGGCTGGATCACATTCTGTCGACTTGGTAGAA
GGAACAATACTTATGTGATGGATATCTTTTATTACTTTCTAACTGAATTATGATGAACACACTCGATGTTCTCTCCAAGG
CAATCTACTAATTTTCCTGCGATTAAAAGTGTGAAGGCTATTGGGTTCCATTCTGTTGCTGTATACATTCACCAAATTAT
AAATTAGAGTACCAGTTGCAATAGTGGGGTCTGATCCGACATTTTGGGAGACACTGCTGCATGATATTCAGACAGCCATT
TTTTTCCTCCTTTTTGGCTGGCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis