Browse Element(s) Details


OsAffx.20484.1.S1_x_at

Description gb:NM_195908.1
DB_XREF= gi:37533175
TID=OsAffx.20484.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0045C13.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g361202/11retrotransposon protein, putative, unclassified
LOC_Os03g246101/11Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os11g056801/11hypothetical protein
LOC_Os04g332301/11hypothetical protein
LOC_Os11g027201/11expressed protein
LOC_Os02g503401/11MAC/Perforin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36080NANA8+22601950..22605279transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36090NANA8+22612739..22613539hypothetical protein
LOC_Os08g36100OsAffx.29550.1.S1_at11/118+22614522..22617974hypothetical protein
LOC_Os08g36100Os.51427.1.S1_at1/118+22614522..22617974hypothetical protein
LOC_Os08g36110Os.50773.1.S1_at11/118+22621961..22623196expressed protein
LOC_Os08g36120OsAffx.20484.2.S1_at11/118+22628284..22629568retrotransposon protein, putative, unclassified
LOC_Os08g36120OsAffx.20484.1.S1_x_at2/118+22628284..22629568retrotransposon protein, putative, unclassified
LOC_Os08g36130OsAffx.447.1.S1_at1/118+22630037..22634586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36140Os.21784.1.S1_at11/118+22640134..22642316expressed protein
LOC_Os08g36150OsAffx.29551.1.S1_at11/118+22644276..22648424Aha1 domain-containing protein, putative, expressed
LOC_Os08g36150Os.8027.1.S1_at9/118+22644276..22648424Aha1 domain-containing protein, putative, expressed
LOC_Os08g36160OsAffx.22947.5.S1_x_at3/118+22650615..22656123retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36160OsAffx.23640.2.S1_at1/118+22650615..22656123retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006955biological_processimmune response
GO:0008219biological_processcell death
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20484.1.S1_x_at--592--1253Chr10:10088251..10088275 (25 bp)
AGTTGGCGCGGTAGAGCTTCTTGAC
NONE
OsAffx.20484.1.S1_x_at--365--4311Chr10:10088368..10088392 (25 bp)
GCCTCGCACCGAAAGCCGTTGGACG
NONE
OsAffx.20484.1.S1_x_at--1003--2351Chr10:10088379..10088403 (25 bp)
AAAGCCGTTGGACGCGAGCACAGCA
NONE
OsAffx.20484.1.S1_x_at--593--6611Chr10:10088385..10088409 (25 bp)
GTTGGACGCGAGCACAGCACCACCA
NONE
OsAffx.20484.1.S1_x_at--436--1712Chr10:10088406..10088430 (25 bp)
ACCACTGGTGCCAACAGCAATGCCG
NONE
OsAffx.20484.1.S1_x_at--1--2151Chr10:10088419..10088443 (25 bp)
ACAGCAATGCCGCTGCCATCGTCGT
NONE
OsAffx.20484.1.S1_x_at--918--9652Chr10:10088469..10088702 (25 bp)
TCAGCTACGACGACGCACACCGAAA
NONE
OsAffx.20484.1.S1_x_at--297--4092Chr10:10088476..10088709 (25 bp)
CGACGACGCACACCGAAATCAGAGA
NONE
OsAffx.20484.1.S1_x_at--112--1871Chr10:10088798..10088822 (25 bp)
ACGACGCCGAGCCTAAGCTGATAGG
NONE
OsAffx.20484.1.S1_x_at--152--41726Chr12:3394476..3394495 (20 bp)
CGCCGAGCCTAAGCTGATAGGGAAA
NONE
OsAffx.20484.1.S1_x_at--507--4191Chr10:10088861..10089186 (25 bp)
CCCTCACGTGGATGCGGCGCGAGAT
NONE
Target Sequence 
AGTTGGCGCGGTAGAGCTTCTTGACGAGCTCTTCTTCTTCTCCTTCCCGCCGGAGCTGGAGACGACGGCGTACCTCTCCA
TCTTGCAGTCTTCTCCCCCATCGGCGCCGGCGACGTCGCCTCGCACCGAAAGCCGTTGGACGCGAGCACAGCACCACCAC
TGGTGCCAACAGCAATGCCGCTGCCATCGTCGTCCTAGCACAGCTCAGCCTCATGCCCTCAGCTACGACGACGCACACCG
AAATCAGAGAAAGGGGAAGAGGTGGGACCTGGACGGGGAGGGCGTCCATGTCAGCGCGGAGCGCAACGATGGGGGGAAGG
CCGGAGCGGACGTCGGCGACGACGCCGAGCCTAAGCTGATAGGGAAAGGCGGGCAATTCACTTTATACACTCCAACACTC
CCCCTCACGTGGATGCGGCGCGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20484.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis