Browse Element(s) Details


Os.21784.1.S1_at

Description gb:AK120178.1
DB_XREF= gi:37989801
TID=Os.21784.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013033H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013033H06, full insert sequence.
FL= gb:AK120178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3614011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36100OsAffx.29550.1.S1_at11/118+22614522..22617974hypothetical protein
LOC_Os08g36100Os.51427.1.S1_at1/118+22614522..22617974hypothetical protein
LOC_Os08g36110Os.50773.1.S1_at11/118+22621961..22623196expressed protein
LOC_Os08g36120OsAffx.20484.2.S1_at11/118+22628284..22629568retrotransposon protein, putative, unclassified
LOC_Os08g36120OsAffx.20484.1.S1_x_at2/118+22628284..22629568retrotransposon protein, putative, unclassified
LOC_Os08g36130OsAffx.447.1.S1_at1/118+22630037..22634586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36140Os.21784.1.S1_at11/118+22640134..22642316expressed protein
LOC_Os08g36150OsAffx.29551.1.S1_at11/118+22644276..22648424Aha1 domain-containing protein, putative, expressed
LOC_Os08g36150Os.8027.1.S1_at9/118+22644276..22648424Aha1 domain-containing protein, putative, expressed
LOC_Os08g36160OsAffx.22947.5.S1_x_at3/118+22650615..22656123retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36160OsAffx.23640.2.S1_at1/118+22650615..22656123retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21784.1.S1_at--942--9751Chr08:22641321..22641345 (25 bp)
TAATCAGTGCATCAGGTCCAACAAT
LOC_Os08g36140
Os.21784.1.S1_at--686--5951Chr08:22641379..22641403 (25 bp)
GAGCAAGCCTGCTGTATGCCGGAAT
LOC_Os08g36140
Os.21784.1.S1_at--62--691Chr08:22641730..22641754 (25 bp)
ATGGAAGGCCCTCAACCGAAAGAGA
LOC_Os08g36140
Os.21784.1.S1_at--644--6271Chr08:22641761..22641785 (25 bp)
GATGTCTATCTATTCACAGAGTGCC
LOC_Os08g36140
Os.21784.1.S1_at--952--1331Chr08:22641778..22641798 (21 bp)
AGAGTGCCCAAACTGCTACGGCCGA
LOC_Os08g36140
Os.21784.1.S1_at--987--911Chr08:22642111..22642135 (25 bp)
AGGCTCGGGATGTTGCTCAACATTC
LOC_Os08g36140
Os.21784.1.S1_at--278--3811Chr08:22642137..22642161 (25 bp)
CTCCTTTCTCCTGTAGTTCAAATCA
LOC_Os08g36140
Os.21784.1.S1_at--208--6571Chr08:22642179..22642203 (25 bp)
GATTCATCACAGGAGCATTACATTA
LOC_Os08g36140
Os.21784.1.S1_at--558--6951Chr08:22642235..22642259 (25 bp)
GTAGCAATTTTGCACGTTTCAGCAA
LOC_Os08g36140
Os.21784.1.S1_at--79--331Chr08:22642261..22642285 (25 bp)
ATAATAACCGTTCTGAAGTCGTTCA
LOC_Os08g36140
Os.21784.1.S1_at--513--2851Chr08:22642276..22642300 (25 bp)
AAGTCGTTCAAAACATCTCTCCTGC
LOC_Os08g36140
Target Sequence 
TAATCAGTGCATCAGGTCCAACAATGCTTACACCAAACGGACTCGCTTCGGATATGATGAGCAAGCCTGCTGTATGCCGG
AATTGCAACGGTAGCGGTGCTGTATTATGTGACATGTGCGGCGGCACTGGAAAATGGAAGGCCCTCAACCGAAAGAGAGC
AAAAGATGTCTATCTATTCACAGAGTGCCCAAACTGCTACGGCCGAGGGAAATTGGTGTGTCCAGTTTGTCTAGGAACAG
GACTGCCAAACAANNAGGGGCTTCTCCGGCGACCAGACGCCAAGAAGCTGCTCGACAAGATGTACAACGGCAAGATATTG
CCAGACTCGTAGATCGTCTCTACAGAATACATGTGAGATATAGTAATTGATAGGATTCGTATGAGATATATAGTCAGGCT
CGGGATGTTGCTCAACATTCTCTCCTTTCTCCTGTAGTTCAAATCAACGTTCTAAACTTAATAGATTCATCACAGGAGCA
TTACATTATTTATTATTTCATCTCAATCATAAGAGCATTGTAGCAATTTTGCACGTTTCAGCAACATAATAACCGTTCTG
AAGTCGTTCAAAACATCTCTCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis