Browse Element(s) Details


OsAffx.23640.2.S1_at

Description gb:NM_189711.1
DB_XREF= gi:34906505
GEN=P0432C03.10
TID=OsAffx.23640.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0432C03.10 (P0432C03.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g567641/11H1flk, putative, expressed
LOC_Os01g185401/11
LOC_Os08g361601/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56710OsAffx.2345.1.S1_at11/111+33049553..33051157F-box domain containing protein
LOC_Os01g56710Os.47942.1.A1_at9/111+33049553..33051157F-box domain containing protein
LOC_Os01g56720OsAffx.11628.1.S1_x_at1/111+33053494..33054293hypothetical protein
LOC_Os01g56730Os.50262.1.S1_at11/111+33062208..33066679expressed protein
LOC_Os01g56730OsAffx.23811.1.S1_x_at11/111+33062208..33066679expressed protein
LOC_Os01g56740Os.11360.1.S1_at11/111+33066811..33068445F-box domain containing protein, expressed
LOC_Os01g56750Os.11360.1.S1_at1/111+33071865..33073157F-box domain containing protein
LOC_Os01g56764Os.35025.1.S1_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764Os.35025.2.S1_x_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.32213.1.A1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.23640.2.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.1072.1.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56780Os.11673.2.S1_x_at11/111+33085980..33091601Plus-3 domain containing protein, expressed
LOC_Os01g56790Os.8434.1.S1_at11/111+33095466..33100129expressed protein
LOC_Os01g56790Os.8434.2.S1_x_at11/111+33095466..33100129expressed protein
LOC_Os01g56800Os.23677.1.S1_at11/111+33100413..33110419MATH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23640.2.S1_at--427--5522Chr12:27143236..27143260 (25 bp)
ATCCCCCGGCGAATCCGAGCTGTTG
NONE
OsAffx.23640.2.S1_at--1083--72365Chr12:14740930..14740950 (21 bp)
GTCCCACTCGGGACCACGCGAGATA
NONE
OsAffx.23640.2.S1_at--1047--7592Chr01:41685007..41685233 (25 bp)
GGGACCACGCGAGATAAAAAATCCA
NONE
OsAffx.23640.2.S1_at--16--3191Chr01:41685249..41685273 (25 bp)
CAATATCTTCTCAATCGTACATCCG
NONE
OsAffx.23640.2.S1_at--758--93916Chr11:21346709..21346732 (24 bp)
TCGTACATCCGATTGACTCCGTTCA
NONE
OsAffx.23640.2.S1_at--471--851NONE
ATGGCACGCTTAGAGCATGGTCTAG
NONE
OsAffx.23640.2.S1_at--100--4131NONE
CGCTTAGAGCATGGTCTAGGACCTA
NONE
OsAffx.23640.2.S1_at--742--3472Chr01:41686018..41686042 (25 bp)
CATGGTCTAGGACCTAACCTGATGT
NONE
OsAffx.23640.2.S1_at--1140--10123Chr11:928544..929026 (25 bp)
AGGTCTCCAGACGTGGCCGTCTTGC
NONE
OsAffx.23640.2.S1_at--64--4511Chr01:41686132..41686156 (25 bp)
GCCGTCTTGCACAGGTTGGGTGATC
NONE
OsAffx.23640.2.S1_at--547--3631NONE
CTTGCACAGGTTGGGTGATCCGGTT
NONE
Target Sequence
ATCCCCCGGCGAATCCGAGCTGTTGGCTCGTCTCCCCTCGTCCCGTGCAACCTCCCGATCGCCCCGCCGCTCGCCGCCGC
CGTCCGCCCTGCCACGAAGGCGCCACGTCGGCGCCACCTCGGCCGCGACCGGGTCAAGCTGGCCCCGGTCCGCCGCTCCC
CTCTGCCCTGCTCGCGTGCGCGGTCCACCGCGAGCCCGCGCGCCGCGTGCTCGCTCCGCACGGTGAACCGTGTCACCGAC
AAGCGGGTCCCACTCGGGACCACGCGAGATAAAAAATCCAATAATCTTAGAAATTCAATATCTTCTCAATCGTACATCCG
ATTGACTCCGTTCAACTTCCAAAATTCCTCAAATCTCGAGATCTATCTAATGGCACGCTTAGAGCATGGTCTAGGACCTA
ACCTGATGTCGGTCTGGGACCCCTCTCGTTGGCATATGGTGAACCTGTGTCGGCTTTCGAAATGCCTTGTCATGAAAGCC
TCAAGGTCTCCAGACGTGGCCGTCTTGCACAGGTTGGGTGATCCGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23640.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis