Browse Element(s) Details


Os.8434.2.S1_x_at

Description gb:NM_191457.1
DB_XREF= gi:34909997
GEN=P0490D09.23
TID=Os.8434.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0490D09.23 (P0490D09.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0490D09.23 (P0490D09.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5679011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56750Os.11360.1.S1_at1/111+33071865..33073157F-box domain containing protein
LOC_Os01g56764Os.35025.1.S1_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764Os.35025.2.S1_x_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.32213.1.A1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.23640.2.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.1072.1.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56780Os.11673.2.S1_x_at11/111+33085980..33091601Plus-3 domain containing protein, expressed
LOC_Os01g56790Os.8434.1.S1_at11/111+33095466..33100129expressed protein
LOC_Os01g56790Os.8434.2.S1_x_at11/111+33095466..33100129expressed protein
LOC_Os01g56800Os.23677.1.S1_at11/111+33100413..33110419MATH domain containing protein, expressed
LOC_Os01g56810Os.33309.1.S1_at9/111+33115336..33119595Cytokinin dehydrogenase 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8434.2.S1_x_at--1103--6311Chr01:33099239..33099263 (25 bp)
GATGCAGTTTGCAGGTGGACCAACA
LOC_Os01g56790
Os.8434.2.S1_x_at--1081--5511Chr01:33099266..33099290 (25 bp)
GAAACAATCCAATCAGGTCTCCTTT
LOC_Os01g56790
Os.8434.2.S1_x_at--322--2391Chr01:33099299..33099323 (25 bp)
AAACATTGCCGAAACTTTGCTTGAT
LOC_Os01g56790
Os.8434.2.S1_x_at--291--5551Chr01:33099324..33099348 (25 bp)
GAAACTGGTCTTGAAGCTCCTGCAA
LOC_Os01g56790
Os.8434.2.S1_x_at--105--1531Chr01:33099430..33099454 (25 bp)
AGCAGAAGCTTCAATCCTACTCCAA
LOC_Os01g56790
Os.8434.2.S1_x_at--727--651Chr01:33099516..33099540 (25 bp)
ATGCACGTTGTAGATGATGGCTCAC
LOC_Os01g56790
Os.8434.2.S1_x_at--843--6231Chr01:33099531..33099555 (25 bp)
GATGGCTCACTGCAATGCCAAGAAA
LOC_Os01g56790
Os.8434.2.S1_x_at--858--9711Chr01:33099558..33099582 (25 bp)
TCAAGAGAGGCCCAGGAGCCCGTTT
LOC_Os01g56790
Os.8434.2.S1_x_at--1029--3431Chr01:33099570..33099594 (25 bp)
CAGGAGCCCGTTTTCTTAGCTAAAG
LOC_Os01g56790
Os.8434.2.S1_x_at--913--1391Chr01:33099622..33099646 (25 bp)
AGACTGATCTTAGCACGCTTCAAGA
LOC_Os01g56790
Os.8434.2.S1_x_at--694--5731Chr01:33099677..33099701 (25 bp)
GACGCTAGAAGGAGACCGCAACTTT
LOC_Os01g56790
Target Sequence 
GATGCAGTTTGCAGGTGGACCAACAGAGAAACAATCCAATCAGGTCTCCTTTAATGAAGAAAACATTGCCGAAACTTTGC
TTGATGAAACTGGTCTTGAAGCTCCTGCAATTACCACACCAAGTGGTATAAATTCATTAGTGAGCTTTGAAGAGGAGAGG
GCATATATAGTTGATTGCTTGACGAAGCTGGAGCAGAAGCTTCAATCCTACTCCAACAACAGTACTAACATTCACTTGTC
AAATTCAGATGTCATAGAGGATTACCTTTCCAACAAAATGCACGTTGTAGATGATGGCTCACTGCAATGCCAAGAAAGCT
CAAGAGAGGCCCAGGAGCCCGTTTTCTTAGCTAAAGAAGCTCATTCTTCAACAGTGAGTCGGAAGACTGATCTTAGCACG
CTTCAAGAAGAAATCTCAAACTTGAACAAAAGATTGAAGACGCTAGAAGGAGACCGCAACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8434.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis