Browse Element(s) Details


Os.33309.1.S1_at

Description gb:AK101022.1
DB_XREF= gi:32986231
TID=Os.33309.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33309 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytokinin oxidase (P0413G02.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149O03, full insert sequence.
FL= gb:AK101022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g568109/11Cytokinin dehydrogenase 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56780Os.11673.2.S1_x_at11/111+33085980..33091601Plus-3 domain containing protein, expressed
LOC_Os01g56790Os.8434.1.S1_at11/111+33095466..33100129expressed protein
LOC_Os01g56790Os.8434.2.S1_x_at11/111+33095466..33100129expressed protein
LOC_Os01g56800Os.23677.1.S1_at11/111+33100413..33110419MATH domain containing protein, expressed
LOC_Os01g56810Os.33309.1.S1_at9/111+33115336..33119595Cytokinin dehydrogenase 5 precursor, putative, expressed
LOC_Os01g56820Os.47987.1.S1_at11/111+33141959..33146300expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046420
GO:0009823biological_processcytokinin catabolism
GO:0005773cellular_componentvacuole
GO:0008131molecular_functionamine oxidase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33309.1.S1_at--1122--9531Chr01:33116607..33116630 (24 bp)
TCTACCCCATGAACAGGCACAAGTG
LOC_Os01g56810
Os.33309.1.S1_at--506--2491NONE
AACAGGCACAAGTGGGACCCGAGGA
NONE
Os.33309.1.S1_at--451--8251Chr01:33115734..33115758 (25 bp)
GGCAGAACCGGGAGATCCTCGAGTT
LOC_Os01g56810
Os.33309.1.S1_at--935--8431Chr01:33115567..33115591 (25 bp)
GGCCAGGGAATCTTCGACTCGCCGC
LOC_Os01g56810
Os.33309.1.S1_at--773--4811Chr01:33115541..33115565 (25 bp)
GCTCTTGGCGGAGTCCTGAAACGAA
LOC_Os01g56810
Os.33309.1.S1_at--675--6231Chr01:33115497..33115521 (25 bp)
GATGGCTAGCTAGGCGCATGTAATT
LOC_Os01g56810
Os.33309.1.S1_at--755--3051Chr01:33115439..33115463 (25 bp)
AATCTGATGTGTAGATTCCTCGCCC
LOC_Os01g56810
Os.33309.1.S1_at--799--7411Chr01:33115431..33115455 (25 bp)
GTGTAGATTCCTCGCCCCATAAAAA
LOC_Os01g56810
Os.33309.1.S1_at--1087--471Chr01:33115403..33115427 (25 bp)
ATCTGATGTGTAGACAATTCTGTAC
LOC_Os01g56810
Os.33309.1.S1_at--596--7031Chr01:33115382..33115406 (25 bp)
GTACAGAGGGATGTATCAGTTTCAT
LOC_Os01g56810
Os.33309.1.S1_at--799--10271Chr01:33115336..33115360 (25 bp)
TTTGCCGGTAAAAGTCGGCGTCTGC
NONE
Target Sequence 
TCTACCCCATGAACAGGCACAAGTGGGACCCGAGGAGCTCGGTGGTGACGCCGGAGGAGGACGTGTTCTACCTGGTGGCG
TTCCTGCGGTCGGCGGTGCCGGGCTCGACCGACCCGGCGCAGAGCCTGGAGGCGCTGGAGCGGCAGAACCGGGAGATCCT
CGAGTTCTGCGACGAGGCCGGCATCGGGGCCAAGCAGTACCTGCCCAACCACAAGGCGCAGCGCGAGTGGGAGGCCCATT
TCGGAGCGAGGTGGGCTCGGTTCGCGCGGCTCAAGGCCGAGTTCGACCCGCGGGCCATGCTCGCCACCGGCCAGGGAATC
TTCGACTCGCCGCCGCTCTTGGCGGAGTCCTGAAACGAAGACGATCGACGAACAAGATGATGGCTAGCTAGGCGCATGTA
ATTAGTAAGAATCATAACAGGTGATTAGTTAGTCTTAATCTGATGTGTAGATTCCTCGCCCCATAAAAAAAAATCTGATG
TGTAGACAATTCTGTACAGAGGGATGTATCAGTTTCATGCAAAATGTGTGCAATGTTTTTTTGCCGGTAAAAGTCGGCGT
CTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis