Browse Element(s) Details


Os.47987.1.S1_at

Description gb:AK122081.1
DB_XREF= gi:37991727
TID=Os.47987.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121A05, full insert sequence.
FL= gb:AK060390.1 gb:AK122081.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5682011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56810Os.33309.1.S1_at9/111+33115336..33119595Cytokinin dehydrogenase 5 precursor, putative, expressed
LOC_Os01g56820Os.47987.1.S1_at11/111+33141959..33146300expressed protein
LOC_Os01g56830OsAffx.24046.7.S1_x_at9/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.3.S1_x_at6/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.2.S1_x_at4/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.5.S1_x_at3/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56840OsAffx.11628.1.S1_x_at11/111+33157695..33158666expressed protein
LOC_Os01g56840OsAffx.11628.2.S1_x_at6/111+33157695..33158666expressed protein
LOC_Os01g56850Os.11659.1.S1_at9/111+33163115..33164962expressed protein
LOC_Os01g56850OsAffx.11628.1.S1_x_at1/111+33163115..33164962expressed protein
LOC_Os01g56860Os.45992.1.S1_at11/111+33166255..33169237WD-repeat protein 13, putative, expressed
LOC_Os01g56870Os.52721.1.S1_at10/111+33169562..33174732expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47987.1.S1_at--821--9771Chr01:33142314..33142338 (25 bp)
TAAGGTGCAACCAATCAATCGTTAG
LOC_Os01g56820
Os.47987.1.S1_at--57--6791Chr01:33142294..33142318 (25 bp)
GTTAGAAAGATCACCTCCAGGGCTC
LOC_Os01g56820
Os.47987.1.S1_at--886--1711Chr01:33142256..33142280 (25 bp)
ACCAGAGTTCCCTTCAGAATGTGTA
LOC_Os01g56820
Os.47987.1.S1_at--226--4611Chr01:33142211..33142235 (25 bp)
GCGACGGGATGCTCATGCACATATT
LOC_Os01g56820
Os.47987.1.S1_at--999--1431Chr01:33142180..33142204 (25 bp)
AGAACCGCCTTCTGGATTAAACGAT
LOC_Os01g56820
Os.47987.1.S1_at--343--2591Chr01:33142161..33142185 (25 bp)
AACGATATCATCAGTGGTGTACCAA
LOC_Os01g56820
Os.47987.1.S1_at--621--7751Chr01:33142146..33142170 (25 bp)
GGTGTACCAACAATATCATCTGCAT
LOC_Os01g56820
Os.47987.1.S1_at--7--6651Chr01:33142109..33142133 (25 bp)
GTTGTATAACTGTTGTTTCCTCATT
LOC_Os01g56820
Os.47987.1.S1_at--11--8931Chr01:33142056..33142080 (25 bp)
TGACGCCATCGAAAGTTGTACATAT
LOC_Os01g56820
Os.47987.1.S1_at--408--10771Chr01:33142024..33142048 (25 bp)
TTGAGCTATTCTGTATGTTCGTGCA
LOC_Os01g56820
Os.47987.1.S1_at--714--6711Chr01:33142008..33142032 (25 bp)
GTTCGTGCAGAGATATCGTCAGTTT
LOC_Os01g56820
Target Sequence 
TAAGGTGCAACCAATCAATCGTTAGAAAGATCACCTCCAGGGCTCCAGTCCTATGGCCACCAGAGTTCCCTTCAGAATGT
GTAAAACAGTTGCGTGAAAGCAAGCGACGGGATGCTCATGCACATATTATTCAGAGAACCGCCTTCTGGATTAAACGATA
TCATCAGTGGTGTACCAACAATATCATCTGCATCGAAAGAGGAATGTTGTATAACTGTTGTTTCCTCATTTACAGTTCCC
CATTTCCCCTTTACCCGTTGACGCCATCGAAAGTTGTACATATCAGAACCTTGAGCTATTCTGTATGTTCGTGCAGAGAT
ATCGTCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis