Browse Element(s) Details


Os.52721.1.S1_at

Description gb:AK068921.1
DB_XREF= gi:32978945
TID=Os.52721.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001D01, full insert sequence.
FL= gb:AK068921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5687010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56820Os.47987.1.S1_at11/111+33141959..33146300expressed protein
LOC_Os01g56830OsAffx.24046.7.S1_x_at9/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.3.S1_x_at6/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.2.S1_x_at4/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.5.S1_x_at3/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56840OsAffx.11628.1.S1_x_at11/111+33157695..33158666expressed protein
LOC_Os01g56840OsAffx.11628.2.S1_x_at6/111+33157695..33158666expressed protein
LOC_Os01g56850Os.11659.1.S1_at9/111+33163115..33164962expressed protein
LOC_Os01g56850OsAffx.11628.1.S1_x_at1/111+33163115..33164962expressed protein
LOC_Os01g56860Os.45992.1.S1_at11/111+33166255..33169237WD-repeat protein 13, putative, expressed
LOC_Os01g56870Os.52721.1.S1_at10/111+33169562..33174732expressed protein
LOC_Os01g56880Os.15904.1.S1_at11/111+33175084..33179387expressed protein
LOC_Os01g56890Os.8123.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56890OsAffx.11629.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56900Os.10706.1.S1_a_at11/111+33187802..33190344expressed protein
LOC_Os01g56910Os.46009.1.S1_at11/111+33196141..33205044expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52721.1.S1_at--23--8491Chr01:33173807..33173831 (25 bp)
TGGCTGGTCAGGCACACTTGATTGC
LOC_Os01g56870
Os.52721.1.S1_at--377--5271Chr01:33173833..33173857 (25 bp)
GAATGCTTCGGTACGCCAATTTTAA
LOC_Os01g56870
Os.52721.1.S1_at--339--7371Chr01:33174253..33174277 (25 bp)
GTGACACTTCATCTGGTGTGCTTGA
LOC_Os01g56870
Os.52721.1.S1_at--909--6391NONE
GATCGTAGTGTTCGGCCAAATAGCT
NONE
Os.52721.1.S1_at--5--3591Chr01:33174441..33174465 (25 bp)
CATTTTGGTGTCATCCGGACGATCT
LOC_Os01g56870
Os.52721.1.S1_at--431--6391Chr01:33174461..33174485 (25 bp)
GATCTGCCCCGTAATGAAACCCGGA
LOC_Os01g56870
Os.52721.1.S1_at--1036--7391Chr01:33174532..33174556 (25 bp)
GTGTTAGGGCTTAGTTCTGTTTCGT
LOC_Os01g56870
Os.52721.1.S1_at--904--4931Chr01:33174594..33174618 (25 bp)
GCTTGGTTCTGCCATTTTGAATTGC
LOC_Os01g56870
Os.52721.1.S1_at--905--1071Chr01:33174637..33174661 (25 bp)
AGGGAATCTGACGACTTGTGCTTGT
LOC_Os01g56870
Os.52721.1.S1_at--616--9591Chr01:33174691..33174715 (25 bp)
TCATTTTGGTGCTGTGGACTGCTGC
LOC_Os01g56870
Os.52721.1.S1_at--356--5731Chr01:33174707..33174731 (25 bp)
GACTGCTGCGTTGCTTAACTTGAGG
LOC_Os01g56870
Target Sequence 
TGGCTGGTCAGGCACACTTGATTGCAGAATGCTTCGGTACGCCAATTTTAAAATCACCAAGGCTGGGATTGGAGGGCCTC
TTATTGATTTTGATGGGAGATATGTTGGTATCAACTTCTTTGATGACATAGTAGGAACCCCATTCCTATCATGCACCGTT
ATCCTCCACGTTCTGTCACGTTTTGATGAAGAAAGGACTATCAATAAAGTTGGCAATGGTGACACTTCATCTGGTGTGCT
TGATTGGACTATGACTGGAGATCGTAGTGTTCGGCCAAATAGCTGGCCCGTGCCCAAGCCATTTTGGTGTCATCCGGACG
ATCTGCCCCGTAATGAAACCCGGACTCGCCACAAATACGGATACTACAATGGACAGAAGTTCAAGTACATGTGTTAGGGC
TTAGTTCTGTTTCGTTGAAAATTTGCTACTTAACCTGTACAAGAAGTCATATGCTTGGTTCTGCCATTTTGAATTGCTAT
GTTTATGTCTTGGCAAGGGAATCTGACGACTTGTGCTTGTCTTGACAATTTATATGTATGTACAAATGTTCATTTTGGTG
CTGTGGACTGCTGCGTTGCTTAACTTGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis