Browse Element(s) Details


Os.15904.1.S1_at

Description gb:AK071643.1
DB_XREF= gi:32981666
TID=Os.15904.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.15904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative purple acid phosphatase (P0413G02.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105J09, full insert sequence.
FL= gb:AK060314.1 gb:AK071643.1 gb:AK059025.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5688011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56830OsAffx.24046.7.S1_x_at9/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.3.S1_x_at6/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.2.S1_x_at4/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.5.S1_x_at3/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56840OsAffx.11628.1.S1_x_at11/111+33157695..33158666expressed protein
LOC_Os01g56840OsAffx.11628.2.S1_x_at6/111+33157695..33158666expressed protein
LOC_Os01g56850Os.11659.1.S1_at9/111+33163115..33164962expressed protein
LOC_Os01g56850OsAffx.11628.1.S1_x_at1/111+33163115..33164962expressed protein
LOC_Os01g56860Os.45992.1.S1_at11/111+33166255..33169237WD-repeat protein 13, putative, expressed
LOC_Os01g56870Os.52721.1.S1_at10/111+33169562..33174732expressed protein
LOC_Os01g56880Os.15904.1.S1_at11/111+33175084..33179387expressed protein
LOC_Os01g56890Os.8123.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56890OsAffx.11629.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56900Os.10706.1.S1_a_at11/111+33187802..33190344expressed protein
LOC_Os01g56910Os.46009.1.S1_at11/111+33196141..33205044expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016036biological_processcellular response to phosphate starvation
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15904.1.S1_at--1084--2911Chr01:33175660..33175784 (25 bp)
AAGGACTGGCCACCAACATGACGGC
LOC_Os01g56880
Os.15904.1.S1_at--312--8291Chr01:33175625..33175649 (25 bp)
GGCTACTCGGCCTTCAGGGAGTCGA
LOC_Os01g56880
Os.15904.1.S1_at--622--8251Chr01:33175594..33175618 (25 bp)
GGCACGCCATCCTGGACATCAAGAA
LOC_Os01g56880
Os.15904.1.S1_at--659--6411Chr01:33175308..33175332 (25 bp)
GATCTAGGTGGTTCTTTCTCCGCTC
LOC_Os01g56880
Os.15904.1.S1_at--292--8471Chr01:33175272..33175296 (25 bp)
TGGCCGTGTGCTGCTTGTGTATAGA
LOC_Os01g56880
Os.15904.1.S1_at--802--1451Chr01:33175250..33175274 (25 bp)
AGAAGAAGCGCAGCTCACGTGCAGC
LOC_Os01g56880
Os.15904.1.S1_at--928--10711Chr01:33175188..33175212 (25 bp)
TTGATAGGCTTGTGTACGTTCGTAC
LOC_Os01g56880
Os.15904.1.S1_at--882--6991Chr01:33175175..33175199 (25 bp)
GTACGTTCGTACTCGTCTAGATGTT
LOC_Os01g56880
Os.15904.1.S1_at--438--2191Chr01:33175144..33175168 (25 bp)
ACACATTGGTTTCGTGGCGTTGCGA
LOC_Os01g56880
Os.15904.1.S1_at--321--8371Chr01:33175129..33175153 (25 bp)
GGCGTTGCGACTTGCATTTGACAAT
LOC_Os01g56880
Os.15904.1.S1_at--1004--8631Chr01:33175099..33175123 (25 bp)
TGGGAGTAACATGGGCTTCTGGCAA
LOC_Os01g56880
Target Sequence 
AAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGGAGTCGAGCTTCGGGCACGCCATCCTG
GACATCAAGAACAGGACGCACGCGTACTACACGTGGCACCGCAACCAGGACGGCAACGCTGTGGCGGCTGACTCCATGTG
GTTCACCAACAGATACTGGCAGCCGACGGATGAATCTTTGGACGACTCCCAGTGATCTGAGTCGTTCGTACATGGTTTAC
TCACACCTGCTCCTCCTCCCTAGNTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGAC
GGACTCACGGACGCCTCCGGTNCAGGCGTCGTGATCTAGGTGGTTCTTTCTCCGCTCCAGCTCCCTCGTGGCCGTGTGCT
GCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGG
CTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACTTGCATTTGACAATCCGA
GTGGGAGTAACATGGGCTTCTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis