Browse Element(s) Details


Os.8123.1.S1_at

Description gb:CR290397
DB_XREF= gi:44676963
DB_XREF=CR290397
CLONE=y879e05p5
TID=Os.8123.1
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0413G02.12 (P0413G02.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5689011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56840OsAffx.11628.1.S1_x_at11/111+33157695..33158666expressed protein
LOC_Os01g56840OsAffx.11628.2.S1_x_at6/111+33157695..33158666expressed protein
LOC_Os01g56850Os.11659.1.S1_at9/111+33163115..33164962expressed protein
LOC_Os01g56850OsAffx.11628.1.S1_x_at1/111+33163115..33164962expressed protein
LOC_Os01g56860Os.45992.1.S1_at11/111+33166255..33169237WD-repeat protein 13, putative, expressed
LOC_Os01g56870Os.52721.1.S1_at10/111+33169562..33174732expressed protein
LOC_Os01g56880Os.15904.1.S1_at11/111+33175084..33179387expressed protein
LOC_Os01g56890Os.8123.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56890OsAffx.11629.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56900Os.10706.1.S1_a_at11/111+33187802..33190344expressed protein
LOC_Os01g56910Os.46009.1.S1_at11/111+33196141..33205044expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8123.1.S1_at--248--7131Chr01:33182595..33182619 (25 bp)
GTCATGCAGCGTTATGGACTCATCT
LOC_Os01g56890
Os.8123.1.S1_at--1116--6631Chr01:33182559..33182583 (25 bp)
GTAGGCGCATGGCTGATTAGTTCCC
LOC_Os01g56890
Os.8123.1.S1_at--425--151Chr01:33182544..33182568 (25 bp)
ATTAGTTCCCTCCATTACTAGCCAA
LOC_Os01g56890
Os.8123.1.S1_at--3--6911Chr01:33182515..33182539 (25 bp)
GTATCCACGGCTCTTGCTGAAGTTA
LOC_Os01g56890
Os.8123.1.S1_at--506--3271Chr01:33182474..33182498 (25 bp)
CAAAACTTGAAGAGCCCATGGAGAG
LOC_Os01g56890
Os.8123.1.S1_at--1005--5551Chr01:33182450..33182474 (25 bp)
GAAACCACATTCTTGCTTATCTTGA
LOC_Os01g56890
Os.8123.1.S1_at--506--4891Chr01:33182436..33182460 (25 bp)
GCTTATCTTGAGTCGCATCACTTGA
LOC_Os01g56890
Os.8123.1.S1_at--152--9991Chr01:33182399..33182423 (25 bp)
TAGCGCCGAGAACACAGTAACGATT
LOC_Os01g56890
Os.8123.1.S1_at--67--10131Chr01:33182362..33182386 (25 bp)
TATGTATGGATCCAGGGCTGCCTCC
LOC_Os01g56890
Os.8123.1.S1_at--1114--3811Chr01:33182341..33182365 (25 bp)
CTCCACCGAGTTAGTCTACGTGTTA
LOC_Os01g56890
Os.8123.1.S1_at--629--3491Chr01:33182301..33182325 (25 bp)
CATGTAACGGTTGTGACTTGAGAAT
LOC_Os01g56890
Target Sequence 
GTCATGCAGCGTTATGGACTCATCTATGTCAAATAAGTAGGCGCATGGCTGATTAGTTCCCTCCATTACTAGCCAATGNT
GTATCCACGGCTCTTGCTGAAGTTACAGGACCAGAAAGGTACAAAACTTGAAGAGCCCATGGAGAGAAACCACATTCTTG
CTTATCTTGAGTCGCATCACTTGATGGAACAAGATATAGCGCCGAGAACACAGTAACGATTAGCTAGTACTACTATGTAT
GGATCCAGGGCTGCCTCCACCGAGTTAGTCTACGTGTTATGCGTTTATTGTATTCATGTAACGGTTGTGACTTGAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis