Browse Element(s) Details


OsAffx.11629.1.S1_at

Description tigr:9629.m05570
TID=OsAffx.11629.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5689011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56840OsAffx.11628.1.S1_x_at11/111+33157695..33158666expressed protein
LOC_Os01g56840OsAffx.11628.2.S1_x_at6/111+33157695..33158666expressed protein
LOC_Os01g56850Os.11659.1.S1_at9/111+33163115..33164962expressed protein
LOC_Os01g56850OsAffx.11628.1.S1_x_at1/111+33163115..33164962expressed protein
LOC_Os01g56860Os.45992.1.S1_at11/111+33166255..33169237WD-repeat protein 13, putative, expressed
LOC_Os01g56870Os.52721.1.S1_at10/111+33169562..33174732expressed protein
LOC_Os01g56880Os.15904.1.S1_at11/111+33175084..33179387expressed protein
LOC_Os01g56890Os.8123.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56890OsAffx.11629.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56900Os.10706.1.S1_a_at11/111+33187802..33190344expressed protein
LOC_Os01g56910Os.46009.1.S1_at11/111+33196141..33205044expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11629.1.S1_at--633--2711Chr01:33183346..33183370 (25 bp)
AAGCTTGAGGCTTTCCATCTGTTGT
LOC_Os01g56890
OsAffx.11629.1.S1_at--99--6671Chr01:33183318..33183342 (25 bp)
GTTGCAGCTGCACGATTGGTTTGAA
LOC_Os01g56890
OsAffx.11629.1.S1_at--212--10351Chr01:33183237..33183261 (25 bp)
TTTAGCCATCCTTAAGACCTGTTTG
LOC_Os01g56890
OsAffx.11629.1.S1_at--869--8671Chr01:33183180..33183204 (25 bp)
TGTGTTTGCTATCCTATCCGTAGGA
LOC_Os01g56890
OsAffx.11629.1.S1_at--1002--6911Chr01:33183161..33183185 (25 bp)
GTAGGACTTCCTGTAGACACTCTTA
LOC_Os01g56890
OsAffx.11629.1.S1_at--581--10491Chr01:33183139..33183163 (25 bp)
TTAAAGTCATCCAAGCCTGTTGCCT
LOC_Os01g56890
OsAffx.11629.1.S1_at--232--4471Chr01:33183125..33183149 (25 bp)
GCCTGTTGCCTTTTTTCACTTTCAA
LOC_Os01g56890
OsAffx.11629.1.S1_at--310--9711Chr01:33183104..33183128 (25 bp)
TCAACATTAGTGCTGCTGGGTAACA
LOC_Os01g56890
OsAffx.11629.1.S1_at--363--2071Chr01:33183076..33183100 (25 bp)
ACTTGCTTCCAATGACCTGTATATT
LOC_Os01g56890
OsAffx.11629.1.S1_at--956--7371Chr01:33183051..33183075 (25 bp)
GTGACCAGAAGAGTCCACCCATGTA
LOC_Os01g56890
OsAffx.11629.1.S1_at--869--591Chr01:33183027..33183051 (25 bp)
ATGCCCTGGGATTCCTAACATTTCA
LOC_Os01g56890
Target Sequence 
AAGCTTGAGGCTTTCCATCTGTTGTTCTGTTGCAGCTGCACGATTGGTTTGAAGTATAAAGTACTTGAAACCAACTCAAG
CCTTGTGTGCTAGTAATACTTAATCAGTCTTTAGCCATCCTTAAGACCTGTTTGGAAATTACAATGTCCCGGAGAAAGAT
AGGCGTTGTGTTTGCTATCCTATCCGTAGGACTTCCTGTAGACACTCTTAAAGTCATCCAAGCCTGTTGCCTTTTTTCAC
TTTCAACATTAGTGCTGCTGGGTAACATGCACTTGCTTCCAATGACCTGTATATTGTGACCAGAAGAGTCCACCCATGTA
TGCCCTGGGATTCCTAACATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis