Browse Element(s) Details


OsAffx.11628.2.S1_x_at

Description gb:NM_191449.1
DB_XREF= gi:34909981
GEN=P0490D09.15
TID=OsAffx.11628.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0490D09.15 (P0490D09.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g568406/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56820Os.47987.1.S1_at11/111+33141959..33146300expressed protein
LOC_Os01g56830OsAffx.24046.7.S1_x_at9/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.3.S1_x_at6/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.2.S1_x_at4/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.5.S1_x_at3/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56840OsAffx.11628.1.S1_x_at11/111+33157695..33158666expressed protein
LOC_Os01g56840OsAffx.11628.2.S1_x_at6/111+33157695..33158666expressed protein
LOC_Os01g56850Os.11659.1.S1_at9/111+33163115..33164962expressed protein
LOC_Os01g56850OsAffx.11628.1.S1_x_at1/111+33163115..33164962expressed protein
LOC_Os01g56860Os.45992.1.S1_at11/111+33166255..33169237WD-repeat protein 13, putative, expressed
LOC_Os01g56870Os.52721.1.S1_at10/111+33169562..33174732expressed protein
LOC_Os01g56880Os.15904.1.S1_at11/111+33175084..33179387expressed protein
LOC_Os01g56890Os.8123.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56890OsAffx.11629.1.S1_at11/111+33182235..33184933expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11628.2.S1_x_at--802--6971Chr01:33057606..33057630 (25 bp)
GTACCGGCACCAGGCAGGCAGGCAA
NONE
OsAffx.11628.2.S1_x_at--803--5171Chr01:33057585..33057609 (25 bp)
GCAAGTACGCCCGTGGGACGAGCAG
NONE
OsAffx.11628.2.S1_x_at--1071--5911Chr01:33057566..33057590 (25 bp)
GAGCAGGGAGCTAGCCGGGTAGGAA
NONE
OsAffx.11628.2.S1_x_at--270--1853Chr01:33158322..33158346 (25 bp)
ACGCAGGAGTTCGACGACGGCGCCA
LOC_Os01g56840
OsAffx.11628.2.S1_x_at--162--5732Chr01:33158403..33158427 (25 bp)
GACTGCGTGCAGTGCCTGCAGGACT
LOC_Os01g56840
OsAffx.11628.2.S1_x_at--1094--1632Chr01:33158435..33158459 (25 bp)
AGCGATGCCGAGATGCTGCTGGAAC
LOC_Os01g56840
OsAffx.11628.2.S1_x_at--107--6351Chr01:33057208..33057232 (25 bp)
GATGCTGCTGGAACACACGAGGGCT
NONE
OsAffx.11628.2.S1_x_at--220--4251Chr01:33057169..33057193 (25 bp)
CCGTCGTGCTGAGCGACGACTGCGT
NONE
OsAffx.11628.2.S1_x_at--545--1852Chr01:33158500..33158525 (25 bp)
ACGACTGCGTGCTCCAGTTCACCAT
LOC_Os01g56840
OsAffx.11628.2.S1_x_at--235--472Chr01:33158536..33158559 (24 bp)
ATCTCCGGCGGCAAGCCTTGGTGGA
LOC_Os01g56840
OsAffx.11628.2.S1_x_at--707--8232Chr01:33158544..33158571 (25 bp)
GGCAAGCCTTGGTGGAGCTCTCCGT
LOC_Os01g56840
Target Sequence 
GTACCGGCACCAGGCAGGCAGGCAAGTACGCCCGTGGGACGAGCAGGGAGCTAGCCGGGTAGGAAGGGCGCGCGGCGATG
GAGTCGGGGCCGCGAGCGCCAGTCCGGCGACGCAGGAGTTCGACGACGGCGCCAACACGGGGCTGGCGGGTCGCGTGCTG
GCGCAGTGCGCGGCGGGCCGCGCGCCGGCGGACTGCGTGCAGTGCCTGCAGGACTCGGCGCGAGCGATGCCGAGATGCTG
CTGGAACACACGAGGGCTGGGAGAGAGCGTCGCCGTCGTGCTGAGCGACGACTGCGTGCTCCAGTTCACCATGCACCTGG
CCTATCTCCGGCGGCAAGCCTTGGTGGAGCTCTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11628.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis