Browse Element(s) Details


OsAffx.11628.1.S1_x_at

Description tigr:9629.m05564
TID=OsAffx.11628.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5684011/11expressed protein
LOC_Os01g567201/11hypothetical protein
LOC_Os01g568501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56820Os.47987.1.S1_at11/111+33141959..33146300expressed protein
LOC_Os01g56830OsAffx.24046.7.S1_x_at9/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.3.S1_x_at6/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.2.S1_x_at4/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.5.S1_x_at3/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56840OsAffx.11628.1.S1_x_at11/111+33157695..33158666expressed protein
LOC_Os01g56840OsAffx.11628.2.S1_x_at6/111+33157695..33158666expressed protein
LOC_Os01g56850Os.11659.1.S1_at9/111+33163115..33164962expressed protein
LOC_Os01g56850OsAffx.11628.1.S1_x_at1/111+33163115..33164962expressed protein
LOC_Os01g56860Os.45992.1.S1_at11/111+33166255..33169237WD-repeat protein 13, putative, expressed
LOC_Os01g56870Os.52721.1.S1_at10/111+33169562..33174732expressed protein
LOC_Os01g56880Os.15904.1.S1_at11/111+33175084..33179387expressed protein
LOC_Os01g56890Os.8123.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56890OsAffx.11629.1.S1_at11/111+33182235..33184933expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11628.1.S1_x_at--423--8491Chr01:33158112..33158136 (25 bp)
TGGCTCAGCGGGTGCTACCTCGCCT
LOC_Os01g56840
OsAffx.11628.1.S1_x_at--760--1771Chr01:33158179..33158203 (25 bp)
ACCGGTGGTTCTTCGACGGCGACAT
LOC_Os01g56840
OsAffx.11628.1.S1_x_at--10--573Chr01:33158202..33158226 (25 bp)
ATCCTGCCGTTCAGCGACAACCTGG
LOC_Os01g56840
OsAffx.11628.1.S1_x_at--163--5732Chr01:33158403..33158427 (25 bp)
GACTGCGTGCAGTGCCTGCAGGACT
LOC_Os01g56840
OsAffx.11628.1.S1_x_at--1095--1632Chr01:33158435..33158459 (25 bp)
AGCGATGCCGAGATGCTGCTGGAAC
LOC_Os01g56840
OsAffx.11628.1.S1_x_at--783--7231Chr01:33158481..33158505 (25 bp)
GTCGCTGTCGCGCTGAGCTACGACT
LOC_Os01g56840
OsAffx.11628.1.S1_x_at--907--5711Chr01:33158502..33158526 (25 bp)
GACTGCGTGCTCCAAGTTCACCATG
LOC_Os01g56840
OsAffx.11628.1.S1_x_at--428--3772Chr01:33158535..33158559 (25 bp)
CTCTCCGGCGGCAAGCCTTGGTGGA
LOC_Os01g56840
OsAffx.11628.1.S1_x_at--426--8611Chr01:33158553..33158577 (25 bp)
TGGTGGAGGAGCTCTCCGTCCGTTT
LOC_Os01g56840
OsAffx.11628.1.S1_x_at--248--3411Chr01:33158594..33158618 (25 bp)
CAGCAGCGCTAGCAATAATCATGTA
LOC_Os01g56840
OsAffx.11628.1.S1_x_at--721--3051Chr01:33158610..33158634 (25 bp)
AATCATGTAGTAGTAGTAGTCGTCA
LOC_Os01g56840
Target Sequence 
TGGCTCAGCGGGTGCTACCTCGCCTACGCCGACACCGACGCGACCTCGCCCCGCGAGAGCGCGTTCCACCGGTGGTTCTT
CGACGGCGACATCCTGCCGTTCAGCGACAACCTGGACCCGACGTTCCTCGACCTGGCCAACGGCGCCGTGTCGGCGCTCG
CCGCCGCCGCCGCGAACCGGTCGGGGTCGGGGCGGACGATGCTGGCGGCGACGCAGGAGTTCGACGACGGCGCCAACACG
GGGCTGGCGGGGAGCGTGCTGGCGCAGTGCGCGGCGGGCCGCGCGCCGGCGGACTGCGTGCAGTGCCTGCAGGACTCGGC
GCGAGCGATGCCGAGATGCTGCTGGAACGCATGGGGGCTGGGAGAGAGCGTCGCTGTCGCGCTGAGCTACGACTGCGTGC
TCCAAGTTCACCATGCACCTGGCCTCTCCGGCGGCAAGCCTTGGTGGAGGAGCTCTCCGTCCGTTTGCCCTCGCCGTTGG
AGCAGCAGCGCTAGCAATAATCATGTAGTAGTAGTAGTCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11628.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis