Browse Element(s) Details


Os.11659.1.S1_at

Description gb:CR289099
DB_XREF= gi:44675665
DB_XREF=CR289099
CLONE=p614h03p3
TID=Os.11659.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0413G02.8 (P0413G02.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g568509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56820Os.47987.1.S1_at11/111+33141959..33146300expressed protein
LOC_Os01g56830OsAffx.24046.7.S1_x_at9/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.3.S1_x_at6/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.2.S1_x_at4/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.5.S1_x_at3/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56840OsAffx.11628.1.S1_x_at11/111+33157695..33158666expressed protein
LOC_Os01g56840OsAffx.11628.2.S1_x_at6/111+33157695..33158666expressed protein
LOC_Os01g56850Os.11659.1.S1_at9/111+33163115..33164962expressed protein
LOC_Os01g56850OsAffx.11628.1.S1_x_at1/111+33163115..33164962expressed protein
LOC_Os01g56860Os.45992.1.S1_at11/111+33166255..33169237WD-repeat protein 13, putative, expressed
LOC_Os01g56870Os.52721.1.S1_at10/111+33169562..33174732expressed protein
LOC_Os01g56880Os.15904.1.S1_at11/111+33175084..33179387expressed protein
LOC_Os01g56890Os.8123.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56890OsAffx.11629.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56900Os.10706.1.S1_a_at11/111+33187802..33190344expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11659.1.S1_at--748--1411Chr01:33164676..33164700 (25 bp)
AGACACCTGTGATGGGACTTGCAAG
LOC_Os01g56850
Os.11659.1.S1_at--203--7631Chr01:33164689..33164713 (25 bp)
GGGACTTGCAAGCTGTTAGCCCTCG
LOC_Os01g56850
Os.11659.1.S1_at--757--551Chr01:33164737..33164761 (25 bp)
ATCCTGTCATTCACGTTCAATTTGC
LOC_Os01g56850
Os.11659.1.S1_at--950--6751Chr01:33164751..33164775 (25 bp)
GTTCAATTTGCAGTAACCATCGCTA
LOC_Os01g56850
Os.11659.1.S1_at--1126--7051Chr01:33164763..33164787 (25 bp)
GTAACCATCGCTATAGCAGCTTGAT
LOC_Os01g56850
Os.11659.1.S1_at--561--3511Chr01:33164871..33164895 (25 bp)
CATGTTTCTAGTGCTTTCAGTGACA
LOC_Os01g56850
Os.11659.1.S1_at--927--10531Chr01:33164886..33164910 (25 bp)
TTCAGTGACACTATTCTAGCCGGTT
LOC_Os01g56850
Os.11659.1.S1_at--829--9991Chr01:33164902..33164926 (25 bp)
TAGCCGGTTGTGTGCTTCTTTGTGA
LOC_Os01g56850
Os.11659.1.S1_at--307--4912Chr01:33164915..33164939 (25 bp)
GCTTCTTTGTGATTTGCAATGCTAT
LOC_Os01g56850
Os.11659.1.S1_at--533--251Chr01:33164956..33164980 (25 bp)
ATATGCCATATTGTCACCTCGGGAA
NONE
Os.11659.1.S1_at--913--5911Chr01:33164988..33165012 (25 bp)
GAGCTATGTGTTCCATTGCATTGCT
NONE
Target Sequence 
AGACACCTGTGATGGGACTTGCAAGCTGTTAGCCCTCGCNTTCGGAGTAGCACTAGGAATAATCCTGTCATTCACGTTCA
ATTTGCAGTAACCATCGCTATAGCAGCTTGATGGAGTCATNGTGCTTGGNGTGGTAGAAATAATGTCTGTCTGGGGGGGT
AGAATGGTTGCCTGATGTTAGCNACTTAGTAGTANCATGTTTCTAGTGCTTTCAGTGACACTATTCTAGCCGGTTGTGTG
CTTCTTTGTGATTTGCAATGCTATGCTCAGCTAGCTGAANATATGCCATATTGTCACCTCGGGAACTAGATAGAGCTATG
TGTTCCATTGCATTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis