Browse Element(s) Details


OsAffx.32213.1.A1_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=psaB
TID=OsAffx.32213.1
CNT=1
FEA=DNA_24
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PSI P700 apoprotein A2 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=PSI P700 apoprotein A2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g567641/11H1flk, putative, expressed
LOC_Os09g075701/11Ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56710OsAffx.2345.1.S1_at11/111+33049553..33051157F-box domain containing protein
LOC_Os01g56710Os.47942.1.A1_at9/111+33049553..33051157F-box domain containing protein
LOC_Os01g56720OsAffx.11628.1.S1_x_at1/111+33053494..33054293hypothetical protein
LOC_Os01g56730Os.50262.1.S1_at11/111+33062208..33066679expressed protein
LOC_Os01g56730OsAffx.23811.1.S1_x_at11/111+33062208..33066679expressed protein
LOC_Os01g56740Os.11360.1.S1_at11/111+33066811..33068445F-box domain containing protein, expressed
LOC_Os01g56750Os.11360.1.S1_at1/111+33071865..33073157F-box domain containing protein
LOC_Os01g56764Os.35025.1.S1_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764Os.35025.2.S1_x_at11/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.32213.1.A1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.23640.2.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56764OsAffx.1072.1.S1_at1/111+33074424..33084646H1flk, putative, expressed
LOC_Os01g56780Os.11673.2.S1_x_at11/111+33085980..33091601Plus-3 domain containing protein, expressed
LOC_Os01g56790Os.8434.1.S1_at11/111+33095466..33100129expressed protein
LOC_Os01g56790Os.8434.2.S1_x_at11/111+33095466..33100129expressed protein
LOC_Os01g56800Os.23677.1.S1_at11/111+33100413..33110419MATH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030385molecular_functionferredoxin:thioredoxin reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32213.1.A1_at--436--5476Chr10:10514157..10514181 (25 bp)
GAACTAAATGTCCTGTCCAAGCCAA
NONE
OsAffx.32213.1.A1_at--54--6056Chr10:10514223..10514247 (25 bp)
GAGATTCCGCGTTTTTGAACCACGA
NONE
OsAffx.32213.1.A1_at--190--7895Chr10:10514250..10514274 (25 bp)
GGCTTGGTTTCCATTTGGGTTGTAG
NONE
OsAffx.32213.1.A1_at--795--2335Chr10:10514337..10514361 (25 bp)
AAAGATCTTCATTGGTCCGTAATCC
NONE
OsAffx.32213.1.A1_at--571--10535Chr10:10514364..10514388 (25 bp)
TTGTATACCACCACTGATAAACCCC
NONE
OsAffx.32213.1.A1_at--534--6475Chr10:10514379..10514403 (25 bp)
GATAAACCCCAGAATAGGCGATATT
NONE
OsAffx.32213.1.A1_at--490--10095Chr10:10514393..10514417 (25 bp)
TAGGCGATATTCACTGGACCGGCGG
NONE
OsAffx.32213.1.A1_at--351--1175Chr10:10514428..10514452 (25 bp)
AGTAAAGGCTTCCACAGCGGGTTGA
NONE
OsAffx.32213.1.A1_at--174--6175Chr10:10514460..10514484 (25 bp)
GAGGATCCCAAATCGCATGAGCAAT
NONE
OsAffx.32213.1.A1_at--514--8975Chr10:10514543..10514567 (25 bp)
TGAAACAGATTTCCGGACGTCCATA
NONE
OsAffx.32213.1.A1_at--113--5776Chr10:10514619..10514643 (25 bp)
GACGTTCCTCAGTAATATCATCATG
NONE
Target Sequence 
GAACTAAATGTCCTGTCCAAGCCAAAGAACTTACCCCGAAAAGTCCTGACAAATGATGATTGAGACGAGATTCCGCGTTT
TTGAACCACGAAAGGCTTGGTTTCCATTTGGGTTGTAGATGTAACCAACCCCCTATTAAGGATAGGGTAGAAAGAAATAA
TAGAAAAAGAGCTCCTGTATAAAGATCTTCATTGGTCCGTAATCCAATTGTATACCACCACTGATAAACCCCAGAATAGG
CGATATTCACTGGACCGGCGGCGCCTCCTCGAGTAAAGGCTTCCACAGCGGGTTGACCAAAATGAGGATCCCAAATCGCA
TGAGCAATAGGTCTTACGTGTAAAGGATCCTGTATCCATGATTCAAAATTTCCTTGCCAAGCGACATGAAACAGATTTCC
GGACGTCCATAGAAAGATTATTGCTAATTGCCCAAAGTGAGAAGCAAAAATGTTCTGATAAAGACGTTCCTCAGTAATAT
CATCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32213.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis